Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l01
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    28   1.5  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    27   2.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   4.5  

>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 202 HQHFNSNIEAFMIQAYIGK-YVKIITLAVIVSAKLRLLRLRSFDYLVTLFK 351
           HQ +  +I+   +   I K Y   I L +I S      RLR F Y +TL K
Sbjct: 465 HQFYGESIDLLPLGNLISKRYPTFILLPIIFSMISLKYRLRQFIYSITLRK 515


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 468 SQRHQGGIFGYNRHKRTNSHEPSPGK 545
           SQ   G +    + KR+  H P+PGK
Sbjct: 164 SQEFYGRVLNVQKAKRSRPHSPTPGK 189


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 519 WYVCACCSQRYRPDVVVNITHQ 454
           W VC+ CS++YR D ++N  H+
Sbjct: 170 WLVCSECSEKYR-DHLLNQKHE 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,557
Number of Sequences: 5004
Number of extensions: 47607
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)