Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15l01
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    29   3.6  
04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047           29   3.6  
11_06_0706 + 26460400-26462254,26462499-26462562,26462929-264629...    28   8.3  

>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 107 FIPLIS*CKFALKKLRLRTHVSGAYCKPLTNITNTSIVI 223
           F PL+   K  +  LRLR  + GAY KP+    N+ +++
Sbjct: 216 FHPLVPLKKSDISALRLRQVIHGAYDKPVETEKNSKLLV 254


>04_01_0581 + 7555323-7555383,7555640-7555727,7556063-7557047
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +1

Query: 40  CLHYENIKLHVKLLVKLMSRN*FHTINFVM*IRP*KT 150
           C+  EN++LH +L+++L +R    +++F+M + P K+
Sbjct: 242 CIFVENLQLHFELVLELATRGFQLSLDFLMDVIPAKS 278


>11_06_0706 +
           26460400-26462254,26462499-26462562,26462929-26462981,
           26464400-26464401,26464528-26464598,26464938-26465020,
           26465065-26465126
          Length = 729

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 166 RLGCILQALN*HHQHFNSNIEAFMIQAYIGKYVKIIT 276
           R GC++QA   H+QH N  IE   +   +G++  +I+
Sbjct: 612 RFGCLMQA---HYQHINLLIEQESMNGSMGRWGMLIS 645


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,227
Number of Sequences: 37544
Number of extensions: 258999
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)