Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15k23
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 431 YNKDQNRENSNVGATTAHFA 490
           +N+ +NR NS +G+T  +++
Sbjct: 369 FNESENRRNSCLGSTETYYS 388


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 394 ILDAVASSLAKTFSSVVTKCDR 329
           +LD   + +A  F+ +  KCDR
Sbjct: 360 VLDCHTAHIACKFAEIKEKCDR 381


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 394 ILDAVASSLAKTFSSVVTKCDR 329
           +LD   + +A  F+ +  KCDR
Sbjct: 71  VLDCHTAHIACKFAEIKEKCDR 92


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 394 ILDAVASSLAKTFSSVVTKCDR 329
           +LD   + +A  F+ +  KCDR
Sbjct: 360 VLDCHTAHIACKFADIKEKCDR 381


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 113 NHCSLFFLQNEFKVYVINRKNTTF 42
           ++  + F QN+ +   INRKN+ +
Sbjct: 153 SNSDVLFKQNKEEEQTINRKNSDY 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,428
Number of Sequences: 438
Number of extensions: 3669
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)