Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15k16
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 0.80
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 2.4
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 2.4
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 25 5.6
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 24 7.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 7.4
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 24 9.8
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 24 9.8
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 24 9.8
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 24 9.8
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 27.5 bits (58), Expect = 0.80
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = -2
Query: 112 HFVSSSLKSQRFYTSFTSIYTFYSQNFHFYAS 17
HF++SSL +++ T+F + T + NF ++++
Sbjct: 795 HFLTSSLLNEQGLTAFEVLMTVWCDNFVYFSN 826
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Frame = -3
Query: 168 CRRLNPI----HLCVVSLWTYFFISF 103
C +LNP+ C++S++ FFISF
Sbjct: 1381 CYQLNPVVNWLKRCIISIFIVFFISF 1406
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 201 LCFQKMCSISFCRRLNPIHLCVVSLWTYFFISFHRV*NH 85
L F + F R + I V+LW FFI F RV H
Sbjct: 195 LSFWGILGYYFLRPYSYIFAIGVALWGAFFIQFWRVQEH 233
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 109 FVSSSLKSQRFYTSFTSIYTFYSQ 38
+V+ LKS T + S+ TFY+Q
Sbjct: 200 YVAPYLKSSELSTYYDSVMTFYAQ 223
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 112 HFVSSSLKSQRFYTSFTSIYTFYSQNFHFYASKFHL 5
HF+ +++ + + Y++FT + F + F YA+ F L
Sbjct: 156 HFLHNAVSTCK-YSAFTFLPKFLKEQFSKYANLFFL 190
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 7.4
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -2
Query: 217 VNHVNFVFPKNVLYLILSPAESYTFMCCVFMDLFFHFVSSS 95
+N +NF YL + P ++YT + LF H +++
Sbjct: 931 INGLNFASCSFPAYLNVHPKQAYTILDSQTHSLFIHVTTNT 971
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 155 ILYIYVLCLYGLIFSFRFIEFEIT 84
IL I++ L+G FRFI++ T
Sbjct: 71 ILQIFLFSLFGSCMLFRFIKYPST 94
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 23.8 bits (49), Expect = 9.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 187 NVLYLILSPAESYTF--MCCVFMDLFFHFVSSSLKSQRFYTSFTSIYTFYS 41
NV ++ + E YT + C F S ++S FY F +IYT Y+
Sbjct: 496 NVESVLNACVEKYTLSSITCSLRLCLLEFPDSLIRSS-FYDYFKAIYTTYT 545
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 137 THKCIGFSRRQNEIEHIFWKHKV 205
TH IG +R E + WKH V
Sbjct: 815 THDRIGDPQRDPETGEVVWKHGV 837
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 159 LNPIHLCVVSLWTYFFISF 103
L+ I C++S++ FFISF
Sbjct: 1322 LDWIRRCIISIFIVFFISF 1340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,109
Number of Sequences: 5004
Number of extensions: 34226
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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