Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15k08
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.05c |ssb3|rpa3|DNA replication factor A subunit Ssb3|Sc...    29   0.73 
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   1.7  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   2.9  
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    27   2.9  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   6.8  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.8  

>SPCC23B6.05c |ssb3|rpa3|DNA replication factor A subunit
           Ssb3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 104

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 85  FYQCLITVLSSRSVNMAN-TDFRKDVTMPVRPRSVYTAHSYN 207
           FY+ +++V    SV +    DF  D+ M V  + V  +H YN
Sbjct: 58  FYEFVVSVKPDSSVQLLTCVDFGTDIDMEVYQKLVLFSHKYN 99


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
 Frame = +1

Query: 166 PVRPRSVYTAHSYNQEESNLSAFQDYSKFLEGGLGQAELVGATGWQPPWRAPLQRKAPF- 342
           P  PR    +   +      SAF    +  E  + Q  +VG    Q    +       F 
Sbjct: 282 PRAPRPSTASEVVSDYFEQNSAFSKAPENTESSVNQNYIVGNLVKQFQAHSEYITSLDFS 341

Query: 343 YPGDDIYHADTWRELEVTDVMGGAGYNASVTPHGTI--CLRLRDRVKVDMTMDGAVRVTN 516
           +P   +  A T + ++V D M G  Y  S+  H     CL ++D      +MD  VR+ N
Sbjct: 342 HPFGTLATASTDKTVKVWD-MAGVVYLGSLKGHSDYVSCLAIQDSFIATGSMDTTVRLWN 400

Query: 517 AKNN 528
             N+
Sbjct: 401 LDND 404


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 307 GAAIPLLRRAQPDLVHLPKICYNLEKRINSTPPDYKSVPCTRSGG 173
           G  + L R   P+L +L +IC+ L +R N +     SV  T S G
Sbjct: 819 GLPMKLPRNQIPELDYLTQICFELFERTNPSGNKEFSVRITLSPG 863


>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 343 YPGDDIYHADTWRELEVTDVMGGAGYNASVTPHGTICL 456
           Y   D+   + W+ +E   V+   G++ +V+P   +CL
Sbjct: 137 YKLKDLQQPNVWKFVEEAKVIYVGGFHLTVSPESMLCL 174


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 67  SRCSCIFYQCLITVLSSRSVNMANTDFRKDVTMPVRPRSVYTAHSYNQEESNLSAFQ 237
           S+ SC  Y C  T + S        DF  ++T   RPR  Y A     E  ++  F+
Sbjct: 826 SKLSCSKYMCSFTFIYS--------DFTSNITNNYRPRIYYLAQFSVCENQSIMTFR 874


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 172 RPRSVYTAHSYNQEESNLSAFQDYSKFLEGGLGQAELV 285
           R RS+Y+A   N   S++   Q+YS+ +   L QA+L+
Sbjct: 78  RARSIYSAAQENAYRSSVKLIQEYSEKVHKKL-QAKLL 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,462
Number of Sequences: 5004
Number of extensions: 52492
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)