Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15k08
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137...    30   1.3  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    28   7.0  
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428...    28   7.0  
04_03_0910 + 20751014-20753437                                         28   7.0  
06_03_1255 + 28780181-28781172,28782065-28782932                       27   9.2  
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025...    27   9.2  

>03_06_0585 -
           34912159-34912224,34912634-34913247,34913350-34913734,
           34913824-34913883
          Length = 374

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/72 (25%), Positives = 31/72 (43%)
 Frame = +1

Query: 94  CLITVLSSRSVNMANTDFRKDVTMPVRPRSVYTAHSYNQEESNLSAFQDYSKFLEGGLGQ 273
           CL+ +L+ R  +   T  R ++   ++ +  Y A  Y QE     +     K  E   GQ
Sbjct: 187 CLMKILTERGYSFTTTAER-EIVRDIKEKLAYIALDYEQELETAKSSSSVEKSYELPDGQ 245

Query: 274 AELVGATGWQPP 309
              +GA  ++ P
Sbjct: 246 VITIGAERFRCP 257


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 310 WRAPLQRKAPFYPGDDIYHADTWRELEVTDVMGGAGYNASVTPHGTI 450
           W   L  +  FY   DIY    W+E  +T  + G G   S  P+G +
Sbjct: 427 WGGGLAERPDFYHFCDIYGLMVWQEFWITGDVDGRGIPIS-NPNGPL 472


>04_04_0481 -
           25541355-25541849,25541933-25542535,25542730-25542837,
           25542925-25543260,25543391-25543461,25543692-25543824
          Length = 581

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 178 RSVYTAHSYNQEESNLSAFQDYSKFLEGGLGQAELVG 288
           R +Y A    +E  ++    ++ K LEG +G+  LVG
Sbjct: 227 RKIYPAAEVEEEIDSMRRSIEHEKQLEGSIGEQSLVG 263


>04_03_0910 + 20751014-20753437
          Length = 807

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 167 GIVTSFLKSVLAILTLLELKTVI-RH**KMHEQRLN 63
           G+V S   S L ILTL+ L  +I RH  K+H Q LN
Sbjct: 450 GVVVSASLSALGILTLVLLLIMIRRHRKKLHCQALN 485


>06_03_1255 + 28780181-28781172,28782065-28782932
          Length = 619

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 179 RGRTGIVTSFLKSVLAILTLLELKTVI 99
           RG+TG+ T+F+       TLL+LK ++
Sbjct: 518 RGKTGVATTFINKNQTETTLLDLKQLL 544


>04_03_0810 -
           19902049-19902069,19902195-19902400,19902523-19902559,
           19902623-19902675,19903149-19903226,19903496-19903586,
           19903773-19903917,19903988-19904227,19904313-19904523,
           19904788-19905232
          Length = 508

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 379 RELEVTDVMGGAGYNASVTPHGTICLRLRDR 471
           RE EV  V GGAG  AS  P G+   R R R
Sbjct: 96  REEEVAGVAGGAGAGASSAPSGSWPGRKRRR 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,151,514
Number of Sequences: 37544
Number of extensions: 389778
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)