Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15k06
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    50   7e-07
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    27   4.2  
U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna bind...    27   5.5  
AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna bi...    27   5.5  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
 Frame = +1

Query: 40  VEVFKTNMNKVMKDILG--RFKELQFFTGESMDC---DGMVAMMEYRDFDGTQIPIMMFF 204
           V+ FK  +   +  +L   RFK L FF GE       +G VA++EYRD DGT++P +M  
Sbjct: 113 VDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLV 172

Query: 205 KHGLEEEK 228
           K  + EEK
Sbjct: 173 KEAIIEEK 180


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 401 LFYCCMQYIFLNTKLFSLVMREASSCQDADMIDK*IKK 288
           LFYC + Y+F+   +  +  RE S  +D   I + IK+
Sbjct: 505 LFYCSLLYLFIFVTVQMIPAREISIMKDLHHIGREIKR 542


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 69  FVHVCFKYFNLVRRLLFQFCY 7
           F+++C +Y    RR L  FCY
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCY 157


>U23176-4|AAC46716.1|  632|Caenorhabditis elegans Fem-3 mrna binding
           factor protein 2 protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 224 RNSKC*IRNNSIIPNWRLDT 283
           RNS+   R+N+++P W LD+
Sbjct: 156 RNSRSFTRSNNVLPTWSLDS 175


>AC006656-6|AAF39879.1|  614|Caenorhabditis elegans Fem-3 mrna
           binding factor protein 1 protein.
          Length = 614

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 224 RNSKC*IRNNSIIPNWRLDT 283
           RNS+   R+N+++P W LD+
Sbjct: 154 RNSRSFTRSNNVLPTWSLDS 173


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 416 FIXC*LFYCCMQYIFLNTKLFSLVMREAS 330
           ++ C  F CCM+Y  L  ++ S VM ++S
Sbjct: 344 YVQCAAFTCCMRYPNLAARMKSNVMAKSS 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,593
Number of Sequences: 27780
Number of extensions: 173877
Number of successful extensions: 458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)