Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15j23
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    30   0.35 
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.3  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   5.8  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    26   5.8  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   7.6  

>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 372 PSTGKRSTIKPIIRSQKIIKSPNVIFITIRNVRILWFSINYLVQD 238
           PST     +   ++  K + S N IF+ +R+ RI   S NY+++D
Sbjct: 14  PSTWYPGHMNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMED 58


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 129 HKN*RIKNQIDFALLLTELNQDRRPHQKSQ 218
           H+N R+   +D +  L +LN+D R H+ S+
Sbjct: 363 HENGRVTRLVDVSNTLDDLNKDMRFHKLSE 392


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 556 DVRYQAGEYLACEAVSDEIISLAIKNGLHGVQLIVFE 446
           D+  Q  +++  E VS+E   LAI N L     +VFE
Sbjct: 368 DLDLQGVDFVLVEGVSEENEGLAIMNRLGKAASVVFE 404


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 535 PRPGTSHPVPPLSLQRQHAMEKSKTSYFKAIVNGKRPASRNYTTHS 672
           P P  SHP+P  +L  +H MEK    Y +     K     N++T+S
Sbjct: 90  PNP-LSHPLPTNALSDEHVMEK----YIRDKYERKLFLDENHSTNS 130


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 521 TSKIFPGLVPHIQ--YHLCRSNANMLWKNRKRATSKPSSTGNDRHQETIQLI 670
           T   +    PH+   Y L  ++A   ++N K   S  SSTG D H   +Q +
Sbjct: 25  TPIFYVNAAPHLGHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTV 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,141
Number of Sequences: 5004
Number of extensions: 58710
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)