Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15j23
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   2.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   3.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.2  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.2  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 373 SINRKA*HNKTNYSVSENYQITECYLHYN 287
           S++ K  HN  NY  + N    + Y + N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNCKKLYYNIN 112


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 373 SINRKA*HNKTNYSVSENYQITECYLHYNSK 281
           S++ K  HN  NY  + N +      +YN K
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKYNYNNNNYNKK 114


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 369 STGKRSTIKPIIRS 328
           +TGKR+ + PI++S
Sbjct: 179 TTGKRNVVTPIVQS 192


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 282 NVRILWFSINYLVQDEF*IPL 220
           N R L+++INY+ Q    +P+
Sbjct: 103 NYRKLYYNINYIEQIPIPVPI 123


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 391 PLPKEAALIKPGPESTI 441
           PLP E+ LIK  P  TI
Sbjct: 134 PLPNESQLIKRHPIVTI 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,846
Number of Sequences: 438
Number of extensions: 4608
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)