Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15j19
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 34 0.020
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.11
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.3
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 26 4.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 5.3
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 5.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 26 5.3
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 7.0
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 25 7.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.0
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 33.9 bits (74), Expect = 0.020
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Frame = +3
Query: 300 FTKYTWIE-IQKMMKHLSTGQNSIVEAIPIGKTYENNNVIVFKIS---------KGKKKC 449
F Y +E I ++ +++ + E +P+G T E ++ K++ K + K
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKK 239
Query: 450 AAFFLGGEDARD---SNSAVXXXXXXXXXXXXKMIFSTLLDELDMYFLPVLNPDGLRYNL 620
GG AR+ S LLD+ + F+PVLN DG Y
Sbjct: 240 VIIIQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTW 299
Query: 621 QKNILW 638
+ LW
Sbjct: 300 SNDRLW 305
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.5 bits (68), Expect = 0.11
Identities = 25/83 (30%), Positives = 36/83 (43%)
Frame = +3
Query: 21 LSFKLLVFGIHNYXLYEVTAFNDIERALLYSMHMKEGNIIFLNSVTSEATIPMNVIVIDK 200
LS LVF +HNY + ++I+ AL + N+ + + E T IVI
Sbjct: 1237 LSSLALVFALHNYKPTPLYVMDEIDAALDFK------NVSIVANYIKERTKNAQFIVISL 1290
Query: 201 KVNFFEKKLNKLYIEYTLKETKS 269
+ N FE + I T TKS
Sbjct: 1291 RSNMFELSSRLVGIYKTANMTKS 1313
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 252 LKETKSELKDLLQINNFTKYTWIEIQKMMKHLSTGQNSIVE 374
LK+T + ++ L+ N + T +E+QK + L+ QN+++E
Sbjct: 387 LKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLE 427
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 177 MNVIVIDKKVNFFEKKLNKLYIEYTLKETKSELKD 281
M I + K NFFEKK++ I + TK KD
Sbjct: 347 MENISLAGKTNFFEKKVSDYQIAGVMSGTKRAEKD 381
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 147 NSVTSEATIPMNVIVIDKKVNFFEKKLNKLYIEYTLKETK 266
N T T+ +N V DK+ + F K++NKL + +++ +
Sbjct: 1241 NIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVR 1280
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = +3
Query: 324 IQKMMKHLSTGQNSIVEAIPIGKTYENNNVIVFKISKGKKKCAAFFLGGEDARDSN 491
++ M+KH + + + Y N IV +I K F G+D D N
Sbjct: 717 LEDMLKHYDVEISPAKSFLEVHPNYLNKGSIVRRILKRSGSVDFVFCAGDDKTDEN 772
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 476 IFTTKKKSSTFLFALGYLKDNNIIIFICFANRYCLDNAILSSRKVLHHFL 327
I + K+ T +L Y DN ++ +NR+ L ++SS+ + +L
Sbjct: 316 IMQSSKQLVTLADSLCYASDNAFVVKEILSNRHILMRDLISSKNQTNSYL 365
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 255 KETKSELKDLLQINNFTKYTW 317
KET S D+L +NF +Y W
Sbjct: 327 KETYSPAMDILVSSNFERYLW 347
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -2
Query: 160 LVTLLRKMMLPSFMCIEYNKALSMSLKAVTSYKX*L*IPKTSNLKDNIKKRIF 2
++ LLR + + + + +++NKA+ L+ V Y IP +++ I KR F
Sbjct: 109 IMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVT-YGIPNHKTVRELIYKRGF 160
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 204 VNFFEKKLNKLYIEYTLKETKSE 272
+N+ +KL +++IE TLK + E
Sbjct: 431 INYVNEKLQQIFIELTLKTEQEE 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,123
Number of Sequences: 5004
Number of extensions: 50477
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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