Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15j16
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.58 
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    24   1.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 388 VTSWLLLYIQLCVCSNGVRSGVGVKINRNNNL 483
           +T WLLL + L +    +R GV  + +   NL
Sbjct: 1   MTKWLLLMVCLGIACQNIRGGVVRENSSGKNL 32


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 388 VTSWLLLYIQLCVCSNGVRSGV 453
           +T WLLL + L +    +R GV
Sbjct: 1   MTKWLLLMVCLGIACQNIRGGV 22


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 167 YVLVTSIFIVTQGSGYLVCVRNFHFYS 87
           Y+L T I +VT      VCV N HF S
Sbjct: 315 YLLFTMI-LVTLSIWITVCVLNVHFRS 340


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 418 LCVCSNGVRSGVG 456
           LC  SNG+ SG+G
Sbjct: 785 LCQASNGIGSGIG 797


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 418 LCVCSNGVRSGVG 456
           LC  SNG+ SG+G
Sbjct: 781 LCQASNGIGSGIG 793


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 388 VTSWLLLYIQLCVCSNGVRSGVGVKINRNNNL 483
           +T+WLLL + L +   G+ S V V+ N    L
Sbjct: 1   MTTWLLLVVCLGIACQGITS-VTVRENSPRKL 31


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 388 VTSWLLLYIQLCVCSNGVRSGVGVKINRNN 477
           +T+WLLL + L +    V S +  + +  N
Sbjct: 1   MTNWLLLIVCLSIACQDVTSAIHQRKSSKN 30


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 173 SHAFQEAPAPPGVCY 217
           SH       PPGVCY
Sbjct: 358 SHPLHGNLLPPGVCY 372


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = +1

Query: 388 VTSWLLLYIQLCVCSNGV 441
           +T W  + I   +C++G+
Sbjct: 132 ITGWSAVVITAAICTSGI 149



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/51 (23%), Positives = 19/51 (37%)
 Frame = -2

Query: 239 HWLAMRCCNTRRAVQGLLEMHGSNYVLVTSIFIVTQGSGYLVCVRNFHFYS 87
           HW  MRC     A   ++      Y  + +I +   GS     +  + F S
Sbjct: 306 HWTVMRCVQAMIAGIVVISAGADAYPPLAAIVLGAIGSIVFYIISRYVFRS 356


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 403 IANLLHCEDNSVPYQE*LLRN 341
           +AN+L  EDN++     LL N
Sbjct: 387 LANVLDLEDNALASHNNLLNN 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,957
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)