Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15j15
         (199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    19   5.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    19   5.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   5.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   5.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   5.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   5.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    19   5.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    19   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    18   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              18   9.9  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  TVLYSLQXK*GKXFISKEVNAETTLGLSSG 181
           T +Y    +  +  +SKE  A  TLG+  G
Sbjct: 305 TTVYQFIEERQRISLSKERRAARTLGVIMG 334


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  TVLYSLQXK*GKXFISKEVNAETTLGLSSG 181
           T +Y    +  +  +SKE  A  TLG+  G
Sbjct: 305 TTVYQFIEERQRISLSKERRAARTLGVIMG 334


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 169 PQCGFRIDLLGYE 131
           P C F I+ + YE
Sbjct: 198 PLCSFAIESISYE 210


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 169 PQCGFRIDLLGYE 131
           P C F I+ + YE
Sbjct: 198 PLCSFAIESISYE 210


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 169 PQCGFRIDLLGYE 131
           P C F I+ + YE
Sbjct: 249 PLCSFAIESISYE 261


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 169 PQCGFRIDLLGYE 131
           P C F I+ + YE
Sbjct: 198 PLCSFAIESISYE 210


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 92  TVLYSLQXK*GKXFISKEVNAETTLGLSSG 181
           T +Y    +  +  +SKE  A  TLG+  G
Sbjct: 305 TTVYQFIEERQRISLSKERRAARTLGVIMG 334


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 168 PNVVSALTSLDMXYFPH 118
           P V  +  S+D+ +FP+
Sbjct: 146 PAVYKSSCSIDVEFFPY 162


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 195 IGYNFPELSPNV 160
           IG    ELSPN+
Sbjct: 223 IGRKLKELSPNI 234


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -2

Query: 174 LSPNVVSAL 148
           LSP+V+SAL
Sbjct: 443 LSPDVISAL 451


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 149 NAETTLGLSSGKLYP 193
           + +TTL +S   LYP
Sbjct: 782 DVKTTLNISDIALYP 796


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,354
Number of Sequences: 438
Number of extensions: 527
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)