Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15j05
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces pom... 30 0.28
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 29 0.37
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 29 0.64
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb... 27 2.0
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 26 4.5
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 6.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 6.0
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 25 6.0
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 6.0
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 6.0
>SPBC30D10.16 |pha2||phrenate dehydratase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 29.9 bits (64), Expect = 0.28
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 474 SCRIMW-HLYFTQTCRMLRHFFFRLRSYCDNW 382
SC+ W ++YF + M +H R+ YCD +
Sbjct: 243 SCKFPWTYIYFVECLGMEKHLIDRVGKYCDTF 274
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 29.5 bits (63), Expect = 0.37
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 382 PVITVRTQPKKKVSQHAARLRKIEMPHNPTRGYVDPAS-VEQHMML 516
PV++ TQPK + A K+ M +P G + PA+ +E+HM L
Sbjct: 359 PVLSTTTQPKVQKPVPKAFQPKVPMEISPFSGELVPATELEEHMRL 404
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 526 ASLQASYAVQRKQDQHILLSDYVASLFYAD 437
A LQ + VQ + LL+DY++S+ YAD
Sbjct: 536 AFLQEDHIVQFQSISSALLTDYISSVLYAD 565
>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 339
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 56 YSNISTSPLSCVCYVNFKL 112
+ N STSP+S V YVN KL
Sbjct: 101 FENASTSPVSDVTYVNTKL 119
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 537 LSTAHLSKHHMLF--NGSRINISSCRIMWHLYFTQTCRMLR 421
L A S H+ + NG+ + +SSC + + Y TQT +++
Sbjct: 133 LRPAKASNKHVTYSPNGNFLAVSSCNGILYFYDTQTRELIK 173
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 382 PVITVRTQPKKKVSQHAARLRKIEMPHNPT 471
P TVR+ K+ S H++++ K +P +PT
Sbjct: 252 PQKTVRSIVKQTSSPHSSKMPKHSLPSSPT 281
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 424 QHAARLRKIEMPHNPTRGYVDPASVEQHMMLGEMRGTKNYKPPEAQRLK 570
Q++ + + EMP + TR Y PA+ + E K+ KPP+ + K
Sbjct: 466 QNSLSVHESEMPPHVTRDYTQPAA-SATPVPKEKPSEKSEKPPKKKGSK 513
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 6.0
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +2
Query: 8 FISVPPFLYLIIKSFVYSNI 67
+I++PP +Y+ + S +Y N+
Sbjct: 113 YIALPPSVYVTVSSHIYENL 132
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 6.0
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 397 RTQPKKKVSQHAARLRKIEMPHNPTRGYVDPAS 495
R QP + HA+ RK P P G+ P S
Sbjct: 117 RRQPSSFLDVHASNTRKRGSPDTPDSGHSTPHS 149
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 491 LPLNSI*CLERCAVLRTISHRKHSV 565
LPL I C++R + +R ++ +H+V
Sbjct: 12 LPLRVIYCIDRASAIRCLAKSQHAV 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,995
Number of Sequences: 5004
Number of extensions: 36383
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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