Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15j01
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical ...    32   0.28 
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    31   0.49 
Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical ...    28   3.5  

>AC024751-4|AAK21505.1|  425|Caenorhabditis elegans Hypothetical
           protein Y18H1A.1 protein.
          Length = 425

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = -2

Query: 143 LQPPRIADITVCNLLIASMRSXILDLFCTVNFLYFEILSFVKKKKKK 3
           L  P IADI      I S R   +D FC    LY  +L F+KKK  K
Sbjct: 340 LAEPCIADIVKS---IRSQRPRAVDSFCQYCSLYISLLYFIKKKVTK 383


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = -2

Query: 134 PRIADITVCNLLIASMRSXILDLFCTVNFLYFEILSFVKKKKKK 3
           P IADI      I + R   +D FC    LY  +L F+KKK  K
Sbjct: 400 PNIADIVKS---IRTQRPRAVDSFCQYCSLYISLLYFIKKKVTK 440


>Z99281-3|CAB16508.1|  482|Caenorhabditis elegans Hypothetical
           protein Y57G11C.6 protein.
          Length = 482

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 98  IASMRSXILDLFCTVNFLYFEILSFVKKKKKK 3
           I S R   +D FC    LY  +L F+KKK  K
Sbjct: 409 IRSQRPRAVDSFCQYCSLYISLLYFIKKKVTK 440


>AC006801-2|AAF60751.1|  914|Caenorhabditis elegans Hypothetical
           protein Y52D5A.1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 226 LDCKLXPEILRCSTEYNXWWS 164
           L  K  P    CST YN WWS
Sbjct: 894 LSLKSIPPRSLCSTSYNRWWS 914


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,336,063
Number of Sequences: 27780
Number of extensions: 160097
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)