Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15i17
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    29   0.59 
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    28   1.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   3.1  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    27   3.1  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   4.2  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    26   4.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   4.2  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    26   5.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.3  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   7.3  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    25   7.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.6  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 518 KENGCVQAMAWRPDGKALAIG-YNLGIIYTVSVEDKGIIDKY 640
           KENGC+  +A  PDG+ +    ++LGI+   SV    + +++
Sbjct: 117 KENGCIIFIAALPDGQIIVSSKHSLGIVEGQSVSHANVGERW 158


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/79 (27%), Positives = 34/79 (43%)
 Frame = +2

Query: 227 SVNYDQSLNSNITYDINHNTADAEPSIVNIVAQSSTCDLTTSKMHCGMRQVGERHVPYQV 406
           + N   + NSN   + N  +A + P+I+N   Q      T + + C     G  H+P  +
Sbjct: 86  NTNTPTTSNSNQNLENNVTSAASMPAILNAAGQLEFSPSTNNALCCCTTVHGHPHMPPNL 145

Query: 407 DLMVWSNRLDLLALSNNKG 463
            L   S RL L  +S   G
Sbjct: 146 -LAASSARLRLPPISTILG 163


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 50  FLTLESENNLMLTHVYIDYT 109
           F+T+ S++N++L  VYID+T
Sbjct: 299 FITIYSDSNVILDLVYIDWT 318


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 479 YVFGLHLYYYLMLANPDGYSRP*DQLDR 396
           YV GLH  YY    NP  Y +  D + R
Sbjct: 38  YVGGLHAIYYFPKLNPRNYHKFVDTISR 65


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 6/22 (27%), Positives = 17/22 (77%)
 Frame = -1

Query: 512 VVSSILFANAIYVFGLHLYYYL 447
           ++  +LF + +++ G+H++Y+L
Sbjct: 408 LILRVLFFSLLFIIGIHIFYFL 429


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC subunit
            Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
 Frame = +2

Query: 65   SENNLMLTHVYIDYTLNILETCIQIINILGMFPNMLYTQKSLQKICHDDY**HQSVNYDQ 244
            SE +  L   ++D  L ILE  +     +G FP    TQ S           H  ++ D+
Sbjct: 855  SEEHNFLKPQFLDALLKILEGWLYTYAKVGQFPFKRLTQASSP---------HTQISLDK 905

Query: 245  S-LNSNITYDINHNTADAEPSIVNIVAQSSTCDLTTSKMHCGMR 373
            + LN  +   + H   D    ++ +V+ S+T     S+  C +R
Sbjct: 906  NPLNRRL---LEHVCCDLTSKLLIVVSLSNTITPEFSQQFCELR 946


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 524 FLLEVVSSILFANAIYVFGLHLYYYLMLA 438
           +LL+ +S  L A   Y FGLHL+   M A
Sbjct: 61  YLLDSISKNLGAPYTYFFGLHLFSTFMSA 89


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 419 WSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKALAIGYNLGII 598
           WS+    +A S  KG + I      +V    P      V A+AW+P    L+   N GI+
Sbjct: 238 WSSNGMYIAASFKKGGILIWDTQSHEVVVELP---YSTVVALAWQPFENVLSFTTNQGIL 294

Query: 599 YT 604
           Y+
Sbjct: 295 YS 296


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 76   PNVNTCIHRLYT*YIRDMYTNN*HSRNVPKYVVYSEISSKN--LPRRLLVTSIS 231
            P  +   H +YT      +     ++NVP+ V + E++  N  LP   L+T +S
Sbjct: 1592 PGTHGITHGMYTSAAARRFVETYAAQNVPERVKHYEVTFVNMVLPNTELITKLS 1645


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 477 IDCIGKKYGAYHLQKKMAVYKRWLGDLME 563
           ++ +GKKYGA  + +  +V   W  D M+
Sbjct: 54  VERLGKKYGAIKVVRPSSVLNPWNEDTMK 82


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 533 VQAMAWRPDGKALAIGYNLGIIYTVSVE 616
           V ++ W   G  LA+G + G+IY   +E
Sbjct: 169 VTSVLWTGKGTQLAVGTDSGVIYIWDIE 196


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -1

Query: 200  KFFEEISEYTTY----LGTFREC*LFVYMSLIY*VYNLCIHVLTLGCFHFPV 57
            KFF E S   +Y    +G  +   + V++      Y+L + VL +G F FP+
Sbjct: 1784 KFFSEYSIKASYWLHSIGIKKNDVVAVFIDKSLDYYSLMLGVLRIGAFFFPL 1835


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,225
Number of Sequences: 5004
Number of extensions: 60980
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)