Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15i04
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 26 4.0
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 26 5.3
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.0
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 7.0
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 7.0
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.0
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 25 9.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 9.2
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 25 9.2
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 9.2
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 167 ERKERSRQEFDYQNKIRS*SAVHHQGR 247
E++ RQ FD N +R + VH Q R
Sbjct: 102 EKRALDRQNFDQYNDLRRAAEVHRQAR 128
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 565 SANNGVHCLIDNGSWSLQA 509
+ +N + +IDNGSW L+A
Sbjct: 20 NVSNDIPLVIDNGSWQLRA 38
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 241 LMMNCTLGPNFILIIK-FLSAPLFSF 167
L++ TLGP F L K FLS+P++ +
Sbjct: 571 LLVQDTLGPRFFLPKKFFLSSPVYDY 596
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.4 bits (53), Expect = 7.0
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = +3
Query: 24 NGLQNKISVCTIIKIAA*DRTRDQLAVMEQMYLIEIFIDKVTVFASDENEKSGADKNLII 203
N LQNK+S II A+ Q Y +E ID ++ + SD+N + D I
Sbjct: 968 NFLQNKLSGNPIISTP---NFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRI 1024
Query: 204 KI--KFG--PKVQFIIKEGQLAVNEKTTDDIV 287
K+ + G + ++ +G++A +T ++V
Sbjct: 1025 KVLQELGYIDAERTVLLKGRVACEINSTSELV 1056
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 41 NFSVYNNQNCCVGPDQGPIGSHG 109
N+ YN Q GP GP +HG
Sbjct: 363 NYKGYNCQQILTGPQLGPGDAHG 385
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 190 LSAPLFSFSSDAKTVTLS 137
L +PLF+FS+DA T T +
Sbjct: 836 LKSPLFNFSADAPTFTFN 853
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 284 DVVRCLFIHCQLTFLDDELHFRTEFYFDNQILVCSALFVLVRRKNCHFVNEYL 126
D ++ I C + ++EL+ T FY D L AL R + F+N ++
Sbjct: 79 DQLQDALISCGIQLKEEELNLSTSFY-DPSSLNTFALTTEDRSRKSDFLNSFV 130
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 475 RCFSICSKTLQKLVNSTNRYQLNNALRYL 561
R +C L+K+ N+ ++N L+YL
Sbjct: 727 RELGLCQSALEKIKNAVGSRRMNQVLQYL 755
>SPAC23C11.01 |||ER membrane protein, ICE2
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.2
Identities = 7/28 (25%), Positives = 18/28 (64%)
Frame = -2
Query: 529 GSWSLQASAVSLSIWKNIVSQCIVPIPT 446
G WS+ + + ++++ N++ Q + P P+
Sbjct: 364 GMWSILSPCILIAVYTNLLLQHLYPTPS 391
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +3
Query: 282 IVECDENGRRKWSRTIRVGKSYLFPSYPDTVLMILSKFPLEIEVWND 422
+V+ + NGRRK T + Y D++ ++S + E +D
Sbjct: 242 VVDVERNGRRKGKTTFQPPSEYCHDEDMDSLHCLMSGYSTEHHTVDD 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,414
Number of Sequences: 5004
Number of extensions: 61239
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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