Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15i02
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   2.8  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.8  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    25   4.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    24   8.5  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    24   8.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   8.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   8.5  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 173 NNPKDVDFSNNPCKIPGAVDKPY 105
           NNP++V+  + P +IP ++  PY
Sbjct: 370 NNPQNVNNGSTPIQIPVSLQTPY 392


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 95  EKFYKACQLHREFYKGYSKSPHPLDYFNES 184
           EKF KAC+   E  K Y +S   ++  +E+
Sbjct: 349 EKFLKACKDLEEVSKSYEESREEIEALHET 378


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 302 YQWFVQSMLVTLLVIYT*YDMVENLNIS 219
           Y WF+  +LVTLLV Y   + + NL +S
Sbjct: 263 YSWFIVVLLVTLLV-YIVGEYLTNLYMS 289


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 218 PIYLSFPPYHIKYKSPAALPTSTGRT 295
           P+Y +F PY+++ +  A  P S  +T
Sbjct: 383 PLYNAFLPYYLETRGNANEPLSVAKT 408


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 176 NESPYKWQCPPEISPIYLSFPPYHIKYKSPAALPTSTGRTID 301
           N  PY    PPE +P    FPP  +  K P  + +    T D
Sbjct: 388 NTLPYTPVFPPESAPAASIFPP-RLTSKQPIPMASPAKLTSD 428


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +2

Query: 95  EKFYKACQLHRE--FYKGYSKSPHPLDYF 175
           EK++  C LHRE   YKG        +YF
Sbjct: 236 EKWFYICSLHRETIVYKGQLAPVQVYNYF 264


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -2

Query: 353 MLTY*IYQLKSGVAGLVYQ--WFVQSMLVTLLVIYT*YDMVENLNISEKFLVDIAIYMGS 180
           M  Y  Y    G +   +Q  + +  + +T LV++     +  + IS  F +  + YMGS
Sbjct: 629 MKPYDCYDFMIGASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGS 688

Query: 179 H*NNPKDVDFSNNPCKI 129
               P  V FSN P +I
Sbjct: 689 AIWTPWRVIFSNLPRRI 705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,711
Number of Sequences: 5004
Number of extensions: 42568
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)