Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15i01
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0726 + 31514480-31514932 35 0.047
06_03_0680 - 23470292-23470384,23470499-23470606,23471145-234713... 31 1.0
09_04_0347 + 16887182-16888504 30 1.3
05_04_0110 + 18058821-18058900,18059119-18059182,18059351-180594... 29 3.1
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 29 3.1
08_01_0039 + 284948-285301 28 5.4
11_06_0064 + 19733643-19734056 28 7.1
10_08_0002 - 13986969-13989338 28 7.1
06_02_0365 + 15190841-15190988,15191296-15191754,15192692-151927... 28 7.1
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716... 27 9.4
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 27 9.4
>01_06_0726 + 31514480-31514932
Length = 150
Score = 35.1 bits (77), Expect = 0.047
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = -3
Query: 474 SLWQAGSGGGGHASRKQSAEILSRALEFYSTPPSPCTTW--HS*WYNILPS*ARK----- 316
S W + SG GG R+ SA + R+L+ SP W H W +L A++
Sbjct: 34 SSWPSLSGAGGTGRRRGSAVV--RSLQLVVRDVSPAAGWCGHRAWRRLLRRLAQETRCIC 91
Query: 315 *SAS*EISASDKPITDRSGPASIETNFD 232
S+S +AS +PIT AS NFD
Sbjct: 92 SSSSPSGAASSRPITFGYDAASYAKNFD 119
>06_03_0680 -
23470292-23470384,23470499-23470606,23471145-23471368,
23473628-23473859
Length = 218
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = -3
Query: 624 NLGFERNERMLYDRHFFA----TIS*S*K*GFK-GRFLEAIVASRQQSRLICH*SSLWQA 460
N G ER+E++ D +F TI G +LE + A + ICH +++ A
Sbjct: 83 NTGLERSEQLKKDLEWFKEQGHTIPEPSAPGTTYASYLEEL-AEKDSQAFICHFYNVYFA 141
Query: 459 GSGGGGHASRKQSAEILS-RALEFY 388
+ GG +K S IL+ + LEFY
Sbjct: 142 HTAGGRMIGKKVSENILNKKELEFY 166
>09_04_0347 + 16887182-16888504
Length = 440
Score = 30.3 bits (65), Expect = 1.3
Identities = 36/97 (37%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Frame = -3
Query: 462 AGSGGGGHASRKQSAEILSRALEFYSTPPSPCTTWHS*WYN-----ILPS*-ARK*SAS* 301
A + GG AS AE + A + + PSP T N PS A SA+
Sbjct: 16 AAAAAGGSASEGSDAEASAEAARGHGSSPSPSKTPPPANPNPKSAAAPPSAVAAPASAAG 75
Query: 300 EIS--ASDKPIT--DRSGPASIETNFDSEISEFPSGS 202
S ASD P + SGP SIE N DSE S P S
Sbjct: 76 SDSGAASDSPRAAGNPSGPRSIEVNSDSEDSALPLAS 112
>05_04_0110 +
18058821-18058900,18059119-18059182,18059351-18059437,
18059521-18059598,18060105-18060201,18060817-18060860,
18061071-18061257,18061324-18061406
Length = 239
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 450 GGGHASRKQSAEILSRALEF 391
GGGH + K S ILSR LEF
Sbjct: 81 GGGHKANKCSEHILSRLLEF 100
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -3
Query: 294 SASDKPITDRSGPASIETNFDSEISEFPSGSRGRYQSQRLRPTRKAA--ARILLHVFQTS 121
+ +P RSG ++ S S RG+ +S RP +AA A +++ F +
Sbjct: 1210 AVQSQPAPKRSGDGGSSSDSGSSKEGGSSSDRGKSESNGNRPGPEAAIIAGMVIGFFTFA 1269
Query: 120 AKRTIVSCILNSDALCTPPN 61
IV+C+ S PP+
Sbjct: 1270 LLLAIVACVCCSKKKKRPPH 1289
>08_01_0039 + 284948-285301
Length = 117
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 516 VASRQQSRLICH*SSLWQAGSGGGGHASRK 427
VA R++ R C W AG GGGG AS +
Sbjct: 17 VARRRRHRRSCGDVGGWWAGVGGGGKASMR 46
>11_06_0064 + 19733643-19734056
Length = 137
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 486 CH*SSLWQAGSGGGGH-ASRKQSAEILSRALEFY 388
C SSLW S GGH A R++ + R L+ Y
Sbjct: 54 CCLSSLWHGSSTAGGHGALRRKRSSAARRPLQVY 87
>10_08_0002 - 13986969-13989338
Length = 789
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 436 GMSSSAGTGLP*ARSVANQTTLLPTSYNSFEESTFETLFSGL 561
G S + G GL A +AN L P ++FE E+L GL
Sbjct: 11 GESGNGGAGLGLAAFIANGEDLGPIVRHAFESGKPESLLQGL 52
>06_02_0365 +
15190841-15190988,15191296-15191754,15192692-15192782,
15192902-15193003,15193126-15193228,15193548-15193685,
15193912-15193974,15195042-15195124,15196312-15196411,
15196640-15196717,15196834-15196941,15197987-15198067,
15200179-15200220,15200221-15200283,15200426-15200482
Length = 571
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 482 WQIRRLCCLLATIASRNLPLKPYFQDYE 565
WQ+ ++ LLA IAS +P + YE
Sbjct: 531 WQVSKVAALLAPIASSGMPTTLQYPPYE 558
>09_04_0503 -
18170645-18170858,18171029-18171222,18171419-18171629,
18172162-18172553,18172926-18173054,18173353-18173487,
18173885-18174088,18174716-18174771,18174793-18174950,
18175864-18176231
Length = 686
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 462 AGSGGGGHASRKQSAEILSRALEFYSTPPSPCTTW 358
AG GGGG +R +AE+ +R ++PP P W
Sbjct: 90 AGEGGGGLRARL-AAEMRARLPPSAASPPQPWGPW 123
>06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = -1
Query: 587 TVIFLLPFHNPENKVSKVDSSKLL*LVGSRVV*FATDLAYGRPVPAEEDMPLGSNLRKSY 408
T++ L E KV+ ++ K+ L S ++ L GR AE+D+ L L K
Sbjct: 1043 TLVRLANISLVEEKVAAMEQGKITKLFPSYLLYEFPSLVGGRVWKAEQDLLLLKALIKHG 1102
Query: 407 RGRWNFI 387
RW +I
Sbjct: 1103 YARWQYI 1109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,327
Number of Sequences: 37544
Number of extensions: 354390
Number of successful extensions: 1353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1349
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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