Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15h22
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    27   2.7  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    27   2.7  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    26   3.5  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    25   8.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.1  

>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 68  NIHKLWEYKEYVNVNGATLNSEIISLLQNSLTVLQVENHFTIVQY 202
           N+   + Y  Y+++   T +   ++ L NS+    V  HF IV Y
Sbjct: 83  NVQSYFRYYNYISLYFVTHSKVPLNRLPNSMIPYTVFAHFDIVPY 127


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 86  EYKEYVNVNGATLNSEIISLLQNSLTVLQVENHFTIVQY 202
           E  +YV V  +    +I+SLL+ +L V+    H  I+ Y
Sbjct: 13  EKSKYVPVRLSDEERKILSLLEAALEVIDYTGHVDIISY 51


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 107 VNGATLNSEIISLLQNSLTVLQVENHF--TIVQYWGQIYATDLDYYIAVGLTNDALTGKK 280
           VN     SE  +   NS+T L V      T  Q   +IY+ D+++Y A       L G +
Sbjct: 133 VNVRLFESETFAKSFNSITTLSVRFSVKNTPAQAIVKIYSKDIEFYEATLAFASKLHGMR 192

Query: 281 YFYTT 295
           +F  T
Sbjct: 193 WFMYT 197


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +2

Query: 365 FPFRGDPSLKIKVLDESFEENHPDRCRFMKEENRLAATISNICEEVEIC 511
           FP    P ++I++ +   +   P    ++++ +RLA  + +   + E C
Sbjct: 131 FPGDEKPGMRIQLANRHIQLRAPKYNSYLRQRSRLAYQVHSFFNDREFC 179


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 299  FQFWSLLPRPKKKYKELSLITTFPFRGDPSLKIKVLDESFEENHPD 436
            F+F   + R  K  KE +    F  R  P L+I  +DE  +  H D
Sbjct: 879  FRFCVSMQRYAKFTKEEAENAEFLLRAYPDLQIAYMDEDPQSRHND 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,661
Number of Sequences: 5004
Number of extensions: 48637
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)