Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15h20
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   7.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   7.0  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   7.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   9.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 253 WFCSW*PYL 279
           WF +W PYL
Sbjct: 287 WFMAWTPYL 295


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 253 WFCSW*PYL 279
           WF +W PYL
Sbjct: 37  WFMAWTPYL 45


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 269 DPTYPPVQSXDPRSQLSRIWNR 334
           DP YP ++    +SQ   I++R
Sbjct: 346 DPEYPMIRVHKTQSQTIDIYSR 367


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 114 DNVYR*YFINFAS 76
           DN+ R YFI F S
Sbjct: 115 DNILRQYFITFFS 127


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 114 DNVYR*YFINFAS 76
           DN+ R YFI F S
Sbjct: 98  DNILRQYFITFFS 110


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 188 KNYKLLMDPFLIKGATKLYRYDG 256
           KNY   +D +  K    + RYDG
Sbjct: 64  KNYPFDVDQWRDKTFVTILRYDG 86


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 164 NVVLHKAPKNYKLLMDPFLIKGATKLY 244
           NV L    +++K   DP    G T+LY
Sbjct: 70  NVWLEHEWQDHKFQWDPAEYGGVTELY 96


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 146 HRTPGHNVVLH 178
           H  PGH+ ++H
Sbjct: 25  HFAPGHDAIVH 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,564
Number of Sequences: 438
Number of extensions: 2117
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)