Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15h19
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    27   1.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   2.3  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    26   3.1  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    26   3.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   3.1  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   3.1  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   4.1  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.5  

>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 249 FSLYILNFFNPFFAPYCTNFVPKGLFFL 166
           F LY++N F+ ++A     F   GL FL
Sbjct: 309 FGLYVVNLFDTYYATKVLGFEGHGLAFL 336


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 163 FWEAQEYEVILGVVKTFRNENT 98
           F+EA+ Y VIL   +T +N NT
Sbjct: 528 FFEAEWYRVILDEAQTIKNRNT 549


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 422 ASSSLIQSIKT*IRSLTLGSSSDRGSIIALSSFSFKVYSSGGISGAVGLPG 270
           ++++ +  ++T   S  +   S   + I+   F F VYS    SG  G PG
Sbjct: 208 SNTNSVNPLQTTFESTNIQEISQSRTKISKPKFKFSVYSDADGSGKDGQPG 258


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 283 TAPEIPPEEYTLNENEERAI 342
           +AP I PEEYT +E + RA+
Sbjct: 523 SAPYIAPEEYTESEFDPRAV 542


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 277 SPTAPEIPPEEY-TLNENEERAIIEPRSLEDPRVRDLIQVLIDWINDELASQRIIVQDII 453
           +P+AP  PP+EY  LN  +  + ++   L+  +  ++    +D I  E  SQ I   ++I
Sbjct: 166 NPSAPPPPPQEYRQLNVTDALSYLDLVKLQFHQEPEIYNEFLD-IMKEFKSQAIETPEVI 224


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = -2

Query: 369 WIFK*SRFDNSPFFVLIQSIFFRGNLWCSWTAWRINSIFPFSLYILNFFNPFFAP 205
           WIF  SR      F+L  SI + G L  S  AWR + +F     I + F  FF P
Sbjct: 180 WIFPESR----RLFILSYSISY-GTLAWSVVAWRNSLLFHSIDKITSLFIHFFPP 229


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/67 (26%), Positives = 28/67 (41%)
 Frame = -3

Query: 221 IPFLRPIVPILSQKDSFSSFLGSTGVRGDFGRGEDISK*KYLPVFSIFDVYNVFCL*QSQ 42
           +P   PI+  + Q  S  S+     +R         S+  YL  F+  + Y+VFC     
Sbjct: 312 VPEHEPILAFVHQLSS--SYTNLLNLRSAICDWLKFSRYHYLKFFTFVEAYSVFCKDTKS 369

Query: 41  TDQSRLI 21
            D+  LI
Sbjct: 370 ADKWALI 376


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 302 LKNIL*MRTKKGLLSNLDHLKIQGSEI 382
           LK I  M+   G+  + DH+ +QG E+
Sbjct: 214 LKEIEEMKDSNGMFCDADHVPLQGQEL 240


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 97  RYFHFEMSSPRPKSPRTP 150
           R  HFE  SP P   RTP
Sbjct: 608 RNTHFESKSPHPNYSRTP 625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,737
Number of Sequences: 5004
Number of extensions: 41613
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)