Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15h19
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 238 VQAEGKYAIDSPGSPTAPEIPPE 306
           V  E  + +     PTAP IPPE
Sbjct: 90  VADENGFQVQGSHIPTAPPIPPE 112


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
 Frame = -2

Query: 303 RGNLWCSWTA-------------WRINSIFPFSLYILNFFNPFFAPYC 199
           RG+LW SW               W +N+     L   +FF  FF  YC
Sbjct: 384 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 431


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 184 KRTLFPLFWEAQEYEVILGVVKTFRNENTYLFSVFLTFTM 65
           KR      W  +EY++    +  F+N N +     +  TM
Sbjct: 143 KREFMQKIWPFKEYQMNGNNITNFKNSNIFQLKQHMRDTM 182


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 265  DSPGSPTAPEIPPEEYTLNENE 330
            D+   PT+ ++PP + T   +E
Sbjct: 1220 DNAEEPTSQKVPPNQLTHEASE 1241


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 274  GSPTAPEIPPEEY 312
            G+P  P I PE+Y
Sbjct: 1177 GAPNVPTILPEQY 1189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,154
Number of Sequences: 438
Number of extensions: 2539
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)