Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15h13
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 30 0.32
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 29 0.56
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 29 0.74
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 28 0.98
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 28 0.98
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 28 1.3
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 27 1.7
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 1.7
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 27 3.0
SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8 |Schizosac... 27 3.0
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 27 3.0
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 26 4.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.0
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 4.0
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc... 25 6.9
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.9
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 9.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.1
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 9.1
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 25 9.1
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 25 9.1
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 29.9 bits (64), Expect = 0.32
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 163 FITKDNEGSYDYNSYNKRNNRPSMGSDYNYLLDD 264
++ DN GS D +S+NK+ S+ ++ N+L D+
Sbjct: 281 YMPADNFGSNDNHSHNKKRRLSSLSTNNNHLCDN 314
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 29.1 bits (62), Expect = 0.56
Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +1
Query: 157 DDFITKDNEGSYDYNSYNKRNNRPSMGSDYNYLLDD--LGNKVEDSLRYKDKPAELNSGP 330
D F+T G++ +S NK NR + D + LDD + KV+ +E
Sbjct: 974 DSFVTHHTPGAFPNDSKNKELNRHFLKVDDSAPLDDTFMSKKVKLDFSSDSNVSERGDYD 1033
Query: 331 SEYEDIMNNGYVD-LDALSENKGFVLNDDESANKMRSRDDLLIS 459
+ + ++ +D S+ L++D+ +N S ++ + S
Sbjct: 1034 DNAKKVDEVISIEKVDGYSKENNVPLSEDDLSNSSESSNESVYS 1077
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.7 bits (61), Expect = 0.74
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 540 WRFIMEKKRYLHLFKCTFLSSSL 472
WR +++KRYL L KC + S+
Sbjct: 811 WRSYIQRKRYLSLIKCAIVIQSI 833
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 28.3 bits (60), Expect = 0.98
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -2
Query: 425 FADSSSFRTKPLFSDNASRSTYPLFIISSYSEGPEFNSAGLSLYLKLSSTLFPRSSKR 252
F DSS+ T P FS+ + SS + P+ S +S L+ S+T P KR
Sbjct: 175 FMDSSALHTSPAFSERLK------LLSSSNNFSPQLRSPKISHRLQTSATSSPLQHKR 226
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 28.3 bits (60), Expect = 0.98
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 160 DFITKDNEGSYDYNSYNKRNNRPSMGSDYNYLLDDLGNKVEDSLR 294
D +KD++ + + N + N+ + D YL+ DL N+ E+ ++
Sbjct: 388 DDSSKDDDNNSESNDMSPHNDAETRADDDAYLMGDLFNQEEEDIQ 432
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/33 (24%), Positives = 21/33 (63%)
Frame = +1
Query: 64 DHALRNVKEDEDPKYEEKRFRRDKDLALFNLDD 162
+H+L++++++ Y K+F + + +N+DD
Sbjct: 29 EHSLKSLQDERTLNYPNKQFNSENPSSYYNMDD 61
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 132 IPTESFLFVFRIFIFLYVSKSVILVS*RVSVYALC 28
+P + F+ FIF + VI VS +V V+ LC
Sbjct: 45 LPKGNLGFLVEFFIFCLIPLFVIYVSSKVGVFTLC 79
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = +1
Query: 112 EKRFRRDKDLALFNLDDFITKDNEG---SYDYNSYNKRNNRPSMGSDYNYLLDDLGNKVE 282
EK DL L N+DD + + NEG S+ N+ + G ++L + L
Sbjct: 212 EKNASSSDDLGLSNIDDLLEQLNEGNDISHVVNATRSKKKVCKGGQVISFLTESLTKYAG 271
Query: 283 DSLRYKDKPAELNSGPSEYEDIMN 354
D + K L Y ++N
Sbjct: 272 DPVARKILTYLLREASRPYTKMLN 295
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 427 YSPIHHHSEQSP-YFQTMRPDQHTHCSLYPRTQKGQSLIPPAY 302
Y+ +H + P FQT+ + C +Y R SL+PP Y
Sbjct: 746 YTVLHDEIQMPPDQFQTLC---YNLCYVYARATSAVSLVPPVY 785
>SPBC1709.20 |pop8||RNase P and RNase MRP subunit Pop8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 108
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 600 RHLVLLAISTSLPFFGFFVLWRFIMEKKRYLHL 502
RHL+ LA++ S FG + F+ + ++L+L
Sbjct: 34 RHLITLALNQSFGIFGSAIPIDFLHRQSKFLYL 66
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 160 DFITKDNEGSYDYNSYNKRNNRPSMGSDYNY 252
D + D E + Y Y+K N R + S Y Y
Sbjct: 209 DLVVIDEEKATPYRGYSKPNERATKQSKYTY 239
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 175 DNEGS---YDYNSYNKRNNRPSMGSDYNYLLDDLGNKVEDSLR 294
DN S +++NS+N NN + SD+NY + + + D+ R
Sbjct: 521 DNSNSIPFFNFNSFN--NNGANWSSDFNYPVSETSGLLTDNNR 561
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.0
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
Frame = +1
Query: 25 LTQCIHTYTLTNQDHAL-RNVKEDEDPKYEEKRFRRDKDLALFNLDDFITKDNEGSYDYN 201
L + I L QD RN+ D+ Y ++ + + + + I D SY N
Sbjct: 926 LEKTIEDLKLALQDELKNRNLLMDDISSYNKQTTKLQEKIKWLERERSILIDELESYRSN 985
Query: 202 SYNKRNNRPSMGSDYNYLLDDLGNKVEDSLRYKDKPAEL 318
+N +NN ++ L ++ ++E + K AEL
Sbjct: 986 QFNYQNNLVQDKNELEERLKEIQKELEVYNNHFMKQAEL 1024
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = -3
Query: 439 DFSFYSPIHHHSEQSPYFQTMRPDQ---HTHCSLYPRTQ 332
DFS + + HS + PYF+++R + HT S YP +Q
Sbjct: 98 DFSRHCTDYGHSYEWPYFRSLRRESMLYHTSGS-YPESQ 135
>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
Sec9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = +1
Query: 187 SYDYNSYNKRNNRPS-MGSDYNY 252
SY NSYN NN S GS NY
Sbjct: 42 SYSSNSYNDNNNSNSTYGSSNNY 64
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 187 SYDYNSYNKRNNRPSMGSDYNYLLDDLGNKVEDSLRYKDKPAELNSGPSEYEDIMNNGYV 366
S++ N+Y KR N + +D +K + + KDK NS + E ++NN +
Sbjct: 7 SFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDK----NSDAYD-EMLLNNNFT 61
Query: 367 DLD 375
LD
Sbjct: 62 LLD 64
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 406 SEQSPYFQTMRPDQHTHCSLYPRTQKGQSLIPPAYPCI 293
S P FQ + P H S YP+ + L+PP P +
Sbjct: 129 SNHLPAFQQIPP---IHQSAYPQNNVAEVLMPPIPPSV 163
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.1
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Frame = +1
Query: 178 NEGSYDYNSYNKRNNRPSMGSDYNYLLDDLGNKVEDSLRYKDKPAELNSG-PS-EYEDIM 351
N+GS + +R N S GS+ + + R KD ++S PS EY D +
Sbjct: 169 NDGSRRNGNGRRRGNYSSHGSN---------KRQTNYSREKDASRSIDSSNPSAEYRDDI 219
Query: 352 NNGYVDLDALSENKGFVLNDDESANKMRSRDDLLISRSDVQTTGKKCAFKEMKIPFFFH 528
NN + S N V E ++ + Q G K ++K+ FH
Sbjct: 220 NNTFGSQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQGGNKHSYKKSDSQQSFH 278
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 409 DDESANKMRSRDDLLISRSDVQTTGKKCAFKEMKIPFFF 525
DD+ + +S +++ S S V+ + FKE+ PF +
Sbjct: 45 DDKEESPSKSLEEISQSVSPVEEEPRDVRFKELSTPFSY 83
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 115 KRFRRDKDLALFNLDDFIT--KDNEGSYDYNSYNKRNNRPSMGSDYNYLLDDLGNKVEDS 288
++F + A+ ++ F T K ++ +DY + + + ++ Y Y +DL N E++
Sbjct: 48 RKFEKSAQEAIEKVNSFYTHLKSSQNVFDYAEKSLQADSSNLLPTYLYNSEDLSNDTENN 107
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 259 LRGNCNRFPLKACYC 215
+R N NR L++CYC
Sbjct: 180 IRNNANRILLESCYC 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,693
Number of Sequences: 5004
Number of extensions: 48666
Number of successful extensions: 192
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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