Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15h10
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   1.1  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   1.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   2.6  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    24   4.5  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   4.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    24   4.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    24   5.9  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    24   5.9  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    23   7.9  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 17  FSMSLNFLFLRIKLAFVCGVLTRLIMLINTETIAEHFIESCFNA---TITLPHVD 172
           F  S  F  L  +   + GVL   ++ + T++   HF+ +C N      T  H+D
Sbjct: 252 FCTSEVFRCLSKRAEILKGVLASNVIAMQTDSYTRHFLSTCSNVLGLETTSTHID 306


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 17  FSMSLNFL-FLRIKLAFVCGVLTRLIMLINTETIAEHFIE 133
           FS+  N L  L  K  F+ GVL  L+  I+ +T A H  E
Sbjct: 366 FSLRNNTLPLLTTKRVFLRGVLEELLWFIHGDTNANHLSE 405


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 96  NIINRVRTPHTKASFMRRNKKFKDIEKFHGN 4
           N +NR          ++RNK  K ++ FHGN
Sbjct: 102 NTMNREANFQRTNEKIQRNKSIKRVKLFHGN 132


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 120 SAIVSVFINIINRVRTPHTKASFMRRNKKFKDIEKFHG 7
           +AIV +   II     PH +A  +   +KF  +  F G
Sbjct: 211 TAIVCIVFAIIGYFAIPHIEADEVEEKQKFDYLGAFFG 248


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -2

Query: 177 HLSTCGRVIVALKQLSIKCSAIVSVFINIIN-RVRTPHTKAS--FMRRNKKFKDIEKF 13
           HL      I     L+ KC AI   ++N++N  +R    + +    R  K  +++EKF
Sbjct: 285 HLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKF 342


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 13  KFFNVFEFFVSPHKAS 60
           K + VFE FV PH AS
Sbjct: 592 KIYKVFEVFVVPHFAS 607


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
            Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 174  LSTCGRVIVALKQLSIKCSAIVSVFINIINRVR 76
            L  C R+I A+KQL + C     V  N ++ VR
Sbjct: 1013 LIMCPRLIKAVKQLGLSCYT-YGVLNNDVDNVR 1044


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 96   NIINRVRTPHTKASFMRRNKKFKDIEKFH 10
            +++ +V T HT     R+ KK  + E++H
Sbjct: 1049 DLLQKVMTLHTDKEAKRKAKKAAEHERYH 1077


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 174 LSTCGRVIVALKQLSIKCSAIVSVFINIINRVRTPHTKASFMRRNKKF 31
           ++ C R+IV  + + +  S   SV   +   +RT   +  ++ R+ KF
Sbjct: 90  VAQCPRMIVETQLIGLFQSNYTSVAEELEQSIRTGDIRRLYLNRSDKF 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,064,211
Number of Sequences: 5004
Number of extensions: 16985
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)