Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15h08
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392     29   2.0  
03_01_0019 + 167900-168343,168567-168751,169076-169430                 28   3.5  
10_08_0890 + 21339976-21340198,21340293-21340402,21340652-213408...    27   4.6  
10_06_0083 + 10471648-10471806,10473261-10473343,10473384-104738...    27   6.0  
01_07_0266 - 42406026-42406146,42406682-42406841,42407131-424072...    27   6.0  
03_02_0220 - 6531255-6532667                                           27   8.0  

>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
          Length = 271

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 114 RLDFITYSKFLGGPTGTLVPTANAHVWGAIWRLHIN 7
           ++D +      GG TG   P   +  WG+IWRL  N
Sbjct: 196 QVDLMESKSAYGGATGVWTPMRES--WGSIWRLDSN 229


>03_01_0019 + 167900-168343,168567-168751,169076-169430
          Length = 327

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 81  GGPTGTLVPTANAHVWGAIWRLHIN 7
           G PTG   P   +  WG+IWRL  N
Sbjct: 263 GTPTGVWTPMRES--WGSIWRLDTN 285


>10_08_0890 +
           21339976-21340198,21340293-21340402,21340652-21340836,
           21341415-21341757
          Length = 286

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 81  GGPTGTLVPTANAHVWGAIWRLHIN 7
           G PTG   P   +  WG+IWRL  N
Sbjct: 222 GPPTGRWTPMRES--WGSIWRLDTN 244


>10_06_0083 +
           10471648-10471806,10473261-10473343,10473384-10473810,
           10475806-10475932,10476329-10476471,10476687-10476749,
           10476833-10476898,10477047-10477085
          Length = 368

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 102 ITYSKFLGGPTGTLVPTANAHVWGAIW 22
           + + +FLG      VP  N   WG IW
Sbjct: 123 VNFGEFLGSRIWPTVPARNRGNWGPIW 149


>01_07_0266 -
           42406026-42406146,42406682-42406841,42407131-42407252,
           42407355-42407467,42407844-42407964,42408030-42408144,
           42408695-42408833
          Length = 296

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 131 FFLRTIGWIL*HIQNSWEVLLEH*CQQ 51
           FF+  +G +L H +N + + L+H C Q
Sbjct: 61  FFVGVVGLVLCHYKNYFRLKLDHYCSQ 87


>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 202 LLNSPVPLPLRHQMFLMEDKKHINSF 125
           L +SP PLPLRH   L+    H   F
Sbjct: 111 LSSSPQPLPLRHYALLLGISAHAGLF 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,779,474
Number of Sequences: 37544
Number of extensions: 206127
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)