Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15g16
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 28 1.4
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 2.4
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos... 26 4.3
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 26 5.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 26 5.6
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 9.9
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 9.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 9.9
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 25 9.9
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 600 VFHSSYYSFEGIYHSKHHFFIKIINHCICFSIKIYRACYQLQDRVLTSFRFAAP 439
+ + +YS G S H F I +H + ++ +Y C+ + +VL A P
Sbjct: 329 ILFALFYSISG---STLHSFRSIKSHLVLSALYLYIGCFHMHTQVLNRMSSALP 379
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 609 ECIVFHSSYYSFEGIYHSKHHFFIKIINHCICFSIK 502
E + S Y S S+ HF +NH +C +++
Sbjct: 123 EMLEMGSHYLSITAFIESRSHFEYGFVNHALCAALR 158
>SPAC607.05 |rpn9||19S proteasome regulatory subunit
Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 600 VFHSSYYSFEGIYHSKHHFFIKIINHCICF 511
+ HSSYYS Y+ + + HC+ +
Sbjct: 156 LIHSSYYSVSADYYKAKADYAQYYRHCLLY 185
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 148 INNMYTRSDEKISEIVENNVIQTAKQELRTIISTNKYDINM 270
+NN T S EK E V V A + + + T KYD+N+
Sbjct: 1 MNNSITDSVEKKPEQVSFEVQPNALRPVAFHVFTRKYDLNI 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 5.6
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 3/145 (2%)
Frame = +1
Query: 172 DEKISEIVENNVIQTAKQELRTIISTNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLS 351
D E EN + K+ + NK +N IE LN + + + + K+ L+
Sbjct: 662 DSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESLNDQLSQLKTEMESVTTSKESLA 721
Query: 352 DIVLMSIYHHNC---SYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANT 522
D + HN S + + F+ +L SS + Q +T NF+ N
Sbjct: 722 DYLSNLKERHNDELDSLNKKLREFEGILSS--NSSLKSEIEERNNQYVTLRENFDSLQNA 779
Query: 523 MIYDLDKEMVLRMINSLERVIT*MK 597
++ DK++ +N L + I +K
Sbjct: 780 IMETFDKQVTHCSVNHLVQQIRKLK 804
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 513 FSIKIYRAC-YQLQDRVLTSFRFAAPKNKLQEPIKASNNFPIRTIV 379
+S + AC + L RVL +F+ AP+ K ++ +N P R +V
Sbjct: 113 YSESVAEACGFDLNTRVL-AFKLDAPEAKKPVDLRTQHNRPQRPVV 157
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 109 NSIEHFDIICNEIINNMYTRSDEKISEIVENNVIQTAKQELRTIISTNKYDINMIIEHLN 288
+ I DI+ N + N +SD K+ E N + ++ ++ ++ Y + IE L+
Sbjct: 747 HKISKDDILQNGVKNGNDAKSDSKVQEKAPQNEADGSLKKDEHVVLSDDYWMKPSIEELS 806
Query: 289 TKDWNQEKL 315
+ +EKL
Sbjct: 807 --KYPKEKL 813
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = -2
Query: 500 FIELVISCRIGY*LVLDSLLPRTSFKSQSKLVITSPYEQL***I--LISTISDNFFFNKS 327
++E+++ + +DS + ++ K +K++ P+ I +I +++N F N
Sbjct: 309 YLEVIVDFLLSSVSDIDSFVRWSAAKGLAKIISRLPWNLAEQVIDAIIELMTENMFLNPI 368
Query: 326 KKAISFS*FQSLVFKCSIIMLMSYLFVEMIVRSSCFAV 213
+ ++ S LV+ +I+ +I S C +
Sbjct: 369 ENTVNISITSPLVWHGAILFFAKLAGAGLIKYSKCLHI 406
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 199 NNVIQT--AKQELRTIISTNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLSDIVLMSI 372
N+ +Q A + L +IS +Y + +I TK L AF+ L+ +S+
Sbjct: 220 NSTLQVLCACEALHDVISPFQYSHSSVIVRKLTKSPESSLLSAFIKFLETFYKSDGTISV 279
Query: 373 YHHNCSYGE 399
Y +GE
Sbjct: 280 YRPTTFFGE 288
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 247 TNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLS 351
T+K + + EHL +NQEKL+ + + +L+
Sbjct: 9 TSKDNTDEDEEHLELSSFNQEKLLEMISVFLSRLT 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,756
Number of Sequences: 5004
Number of extensions: 49227
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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