Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15g16
(669 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC019826-1|AAH19826.1| 183|Homo sapiens COMM domain containing ... 36 0.13
BC015145-1|AAH15145.1| 183|Homo sapiens COMM domain containing ... 36 0.17
BC008371-1|AAH08371.1| 183|Homo sapiens COMM domain containing ... 36 0.17
AY542163-1|AAS22245.1| 183|Homo sapiens COMMD8 protein. 36 0.17
AK000509-1|BAA91216.1| 183|Homo sapiens protein ( Homo sapiens ... 36 0.17
AF182421-1|AAG14957.1| 132|Homo sapiens MDS022 protein. 36 0.17
M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth f... 31 3.7
J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth f... 31 3.7
BC032224-1|AAH32224.1| 1106|Homo sapiens platelet-derived growth... 30 8.6
BC013051-1|AAH13051.1| 686|Homo sapiens LIM domain kinase 2 pro... 30 8.6
AC002073-3|AAB54055.1| 733|Homo sapiens Lim kinase protein. 30 8.6
>BC019826-1|AAH19826.1| 183|Homo sapiens COMM domain containing 8
protein.
Length = 183
Score = 35.9 bits (79), Expect = 0.13
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 378
+V++ + + I+ N D I + LN +QE ++ + K ++ + I
Sbjct: 53 HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111
Query: 379 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 558
+ + + FDW +KL+L S + + P+L L + NGE ++ +E +
Sbjct: 112 ISSAQ---LQDFDWQVKLLLSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167
Query: 559 MINSLE 576
+I SLE
Sbjct: 168 LIQSLE 173
>BC015145-1|AAH15145.1| 183|Homo sapiens COMM domain containing 8
protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.17
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 378
+V++ + + I+ N D I + LN +QE ++ + K ++ + I
Sbjct: 53 HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111
Query: 379 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 558
+ + + FDW +KL L S + + P+L L + NGE ++ +E +
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167
Query: 559 MINSLE 576
+I SLE
Sbjct: 168 LIQSLE 173
>BC008371-1|AAH08371.1| 183|Homo sapiens COMM domain containing 8
protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.17
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 378
+V++ + + I+ N D I + LN +QE ++ + K ++ + I
Sbjct: 53 HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111
Query: 379 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 558
+ + + FDW +KL L S + + P+L L + NGE ++ +E +
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167
Query: 559 MINSLE 576
+I SLE
Sbjct: 168 LIQSLE 173
>AY542163-1|AAS22245.1| 183|Homo sapiens COMMD8 protein.
Length = 183
Score = 35.5 bits (78), Expect = 0.17
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 378
+V++ + + I+ N D I + LN +QE ++ + K ++ + I
Sbjct: 53 HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111
Query: 379 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 558
+ + + FDW +KL L S + + P+L L + NGE ++ +E +
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167
Query: 559 MINSLE 576
+I SLE
Sbjct: 168 LIQSLE 173
>AK000509-1|BAA91216.1| 183|Homo sapiens protein ( Homo sapiens
cDNA FLJ20502 fis, clone KAT09323. ).
Length = 183
Score = 35.5 bits (78), Expect = 0.17
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 378
+V++ + + I+ N D I + LN +QE ++ + K ++ + I
Sbjct: 53 HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 111
Query: 379 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 558
+ + + FDW +KL L S + + P+L L + NGE ++ +E +
Sbjct: 112 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 167
Query: 559 MINSLE 576
+I SLE
Sbjct: 168 LIQSLE 173
>AF182421-1|AAG14957.1| 132|Homo sapiens MDS022 protein.
Length = 132
Score = 35.5 bits (78), Expect = 0.17
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Frame = +1
Query: 202 NVIQTAKQELRTIISTNKYDINMIIEHLNT-KDWNQEKLIAFLDLLKKKLSDIVLMSIYH 378
+V++ + + I+ N D I + LN +QE ++ + K ++ + I
Sbjct: 2 HVLEDIAKFFKAIVGKNLPD-EEIFQQLNQLNSLHQETIMKCVKSRKDEIKQALSREIVA 60
Query: 379 HNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGEANTMIYDLDKEMVLR 558
+ + + FDW +KL L S + + P+L L + NGE ++ +E +
Sbjct: 61 ISSAQ---LQDFDWQVKLALSSDKIAALRMPLLSL-HLDVKENGEVKPYSIEMSREELQN 116
Query: 559 MINSLE 576
+I SLE
Sbjct: 117 LIQSLE 122
>M21616-1|AAA36427.1| 1106|Homo sapiens platelet-derived growth
factor receptor protein.
Length = 1106
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 334 LKKKLSDIVLMSIYHHNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGE 513
L +K D+ L Y H + + ++ K +G E + Y + +L SSIN +
Sbjct: 160 LHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 219
Query: 514 A 516
A
Sbjct: 220 A 220
>J03278-1|AAA60049.1| 1106|Homo sapiens platelet-derived growth
factor receptor protein.
Length = 1106
Score = 31.1 bits (67), Expect = 3.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 334 LKKKLSDIVLMSIYHHNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGE 513
L +K D+ L Y H + + ++ K +G E + Y + +L SSIN +
Sbjct: 160 LHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 219
Query: 514 A 516
A
Sbjct: 220 A 220
>BC032224-1|AAH32224.1| 1106|Homo sapiens platelet-derived growth
factor receptor, beta polypeptide protein.
Length = 1106
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 334 LKKKLSDIVLMSIYHHNCSYGEVITSFDWLLKLVLGSSESKTSQYPILQLITSSINFNGE 513
L +K D+ L Y H + + ++ K +G E + Y + +L SSIN +
Sbjct: 160 LHEKKGDVALPVPYDHQRGFFGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 219
Query: 514 A 516
A
Sbjct: 220 A 220
>BC013051-1|AAH13051.1| 686|Homo sapiens LIM domain kinase 2
protein.
Length = 686
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 247 TNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLSDI 357
T KYD + +HLN ++W E+L D ++++S++
Sbjct: 596 TIKYDPKELRKHLNLEEWILEQLTRLYDCQEEEISEL 632
>AC002073-3|AAB54055.1| 733|Homo sapiens Lim kinase protein.
Length = 733
Score = 29.9 bits (64), Expect = 8.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 247 TNKYDINMIIEHLNTKDWNQEKLIAFLDLLKKKLSDI 357
T KYD + +HLN ++W E+L D ++++S++
Sbjct: 596 TIKYDPKELRKHLNLEEWILEQLTRLYDCQEEEISEL 632
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,182,372
Number of Sequences: 237096
Number of extensions: 1408312
Number of successful extensions: 2717
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2717
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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