Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15g05
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   1.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.4  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 275 FLLITVLSSLIFMVTSSSSITFPCRYLSAKTWAA 174
           F  I V++ LIF+    + I   CR  S  +WAA
Sbjct: 7   FFFILVIT-LIFLYFGEADIKKDCRKESKVSWAA 39


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 88  RLVPFYCDLSMQDWIKSCLE 29
           +LVP  CDLS Q+ I   +E
Sbjct: 57  KLVPLQCDLSNQNDILKVIE 76


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 31  LNKILSNPALKDHNKMELNEEWNNFMKRIGDVSNLVRDMAS 153
           LNKI  NP L  H + +L  E     K I  V N + + A+
Sbjct: 573 LNKIGKNPNLVAHREEDLGSE----SKTINAVVNALAEQAA 609


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 31  LNKILSNPALKDHNKMELNEEWNNFMKRIGDVSNLVRDMAS 153
           LNKI  NP L  H + +L  E     K I  V N + + A+
Sbjct: 541 LNKIGKNPNLVAHREEDLGSE----SKTINAVVNALAEQAA 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,712
Number of Sequences: 438
Number of extensions: 3299
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)