Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f23
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   3.6  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   3.6  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    24   6.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   6.3  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    23   8.3  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    23   8.3  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   8.3  

>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 203 KENKDIEECFRDTNRCRNL 259
           KENK I E F+ +N+ +NL
Sbjct: 61  KENKKIWEFFKGSNKIKNL 79


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 312 IPTXIPSVEYKPQIIRMPKLRHLL 241
           I T + S+E   QII + K++HLL
Sbjct: 458 IETLLESLETNSQIISLSKVQHLL 481


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 83  GYSTNGFSPIEFLL 42
           GY   GFS IEFLL
Sbjct: 239 GYPQEGFSAIEFLL 252


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 257 NYGIC*YLGNIPQYLCSLLPNLLKSHHEXLKQ 162
           N+  C +  N+  Y CS LP+L K      +Q
Sbjct: 229 NFVYCDHCSNVYHYDCSPLPSLNKETRNYSQQ 260


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 103 QAFTIFSAILRMVFLLLSFFSSAVIVRIFRH 11
           +  ++F   L  VF   +FF   ++  IF H
Sbjct: 105 EKISMFDTFLVRVFQFCAFFFGGIVFYIFNH 135


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 98  VHYFLGYSTNGFSPIE 51
           + Y  GY  N FSP+E
Sbjct: 354 IQYLHGYGVNKFSPLE 369


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = -3

Query: 103 QAFTIFSA----ILRMVFLLLSFFSSAVIVRIFRH 11
           +A T+F +    +LR++FLL +  + AV  R  RH
Sbjct: 32  RALTVFESLPLEVLRLIFLLSNNSNLAVTSRSLRH 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,085,279
Number of Sequences: 5004
Number of extensions: 17280
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)