Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f23
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine rece...    26   6.6  

>U40417-9|AAA81417.2|  120|Caenorhabditis elegans Hypothetical
           protein T08A9.13 protein.
          Length = 120

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 15  RKILTMTAEEKKLNRRKTIRRIAEKIVNA 101
           +KI T+T +E+K N   T ++IA+ I+ A
Sbjct: 69  KKIPTLTEQERKENETLTKKKIAKAIIAA 97


>U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine
           receptor, class m protein1 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 91  IFSAILRMVFLLLSFFSSAVIVRI 20
           IF A+LR++F +L  FSS  +  I
Sbjct: 50  IFGAVLRLIFSVLIVFSSPTLAYI 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,835,307
Number of Sequences: 27780
Number of extensions: 93591
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)