Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f22
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   2.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.5  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   9.5  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   9.5  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 448 FCRPGPLDGMFCIHWLALCKDKGHRRR 368
           F +     G+F +HW  +  D+GH  R
Sbjct: 636 FSQQSHSSGLFSVHWFRVVLDEGHNIR 662


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 393 QSASQCIQNMPSSGPGLQKNSRYNI 467
           +S S C++ +P+  P  +   RYN+
Sbjct: 584 ESLSHCVKRLPTPIPAEELQKRYNL 608


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  SLMKKILHKN*DDVSVIMFVCR 81
           S+   I H N DDV  + F+C+
Sbjct: 460 SMEAPIFHVNGDDVEAVTFICQ 481


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 369 GDWTRAG-PCFMSVAVTALAARQLTFPS 289
           G W + G  C +++A+T    RQ+ FP+
Sbjct: 65  GFWGKFGIACLLAIALTVPLTRQIFFPA 92


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 495 HNQTDVETVRYCIGYSSVGLARWTACSV 412
           HNQT    + Y +G       RWT   +
Sbjct: 229 HNQTYTNLINYLLGSGGTYYHRWTESDI 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,930
Number of Sequences: 5004
Number of extensions: 43522
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)