Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f22
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0980 - 29868501-29868773,29868862-29869077,29869443-29869673     30   1.3  
02_05_0379 - 28454026-28454325,28454416-28454631,28454729-284549...    29   1.8  
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393           28   4.1  
02_04_0612 + 24370446-24373044,24373135-24373541                       27   7.2  
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917     27   9.5  

>04_04_0980 - 29868501-29868773,29868862-29869077,29869443-29869673
          Length = 239

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 72  CLSLHADKHSVRITLSAYRSSQITQKVQEVL 164
           CLS H D H+++I  S+Y       ++Q+VL
Sbjct: 66  CLSYHRDHHAIQIRRSSYHDVIRVSEIQKVL 96


>02_05_0379 -
           28454026-28454325,28454416-28454631,28454729-28454935,
           28455024-28455074
          Length = 257

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 69  VCLSLHADKHSVRITLSAYRSSQITQKVQEVL 164
           +CLS H D H+++I  S+Y       ++Q+VL
Sbjct: 74  LCLSHHRDHHAIQIRRSSYHDVIRVSEIQKVL 105


>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
          Length = 322

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 376 RRRGLDQSWTL-LHVRCRHGSRSTTAD--ISQSTPRGEWRPNSVECSRL 239
           R R L    TL  H R RHG+R         +   RG+WR +   C RL
Sbjct: 225 RARPLKDFRTLQTHYRRRHGARDFACRRCAKRFAVRGDWRTHEKNCGRL 273


>02_04_0612 + 24370446-24373044,24373135-24373541
          Length = 1001

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 236 TQTRTLNRVRPPFSARC-GLGNVSCRAARA--VTATDMKQG 349
           TQT  L  +   F   C G+GNV CR  RA  ++  D K+G
Sbjct: 7   TQTAKLAIILLAFILLCHGIGNVDCRGNRADQLSLLDFKKG 47


>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
          Length = 447

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 347 PASCPLPSRLSQHDS 303
           PASCP  SRL  HDS
Sbjct: 403 PASCPWGSRLPDHDS 417


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,221
Number of Sequences: 37544
Number of extensions: 328973
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)