Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f17
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    24   3.0  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    23   5.3  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    22   9.3  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    22   9.3  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    22   9.3  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    22   9.3  

>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 33  WPRTTK*IETIPINHAHKVT 92
           WP+  K +E +  NH   VT
Sbjct: 113 WPKLAKVVEAVRANHGPNVT 132


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 62  RFNLFCSSRPYLMILTDVKS 3
           R++  C  RPY  I TD+ S
Sbjct: 233 RYHDLCEKRPYKYITTDLLS 252


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 100 MLFVTLWAWLIGI 62
           M++V  W WL+G+
Sbjct: 154 MMWVFCWRWLLGV 166


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 89  HFVGMVDWNRFNLFCSSRPYLMIL 18
           HF G+ DW +  +   + P   +L
Sbjct: 185 HFTGIADWEQIQMLRKNLPSETVL 208


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 85  LWAWLIGIVSIYFVVL 38
           LW WLI +V I  + L
Sbjct: 96  LWGWLIAMVFIICIAL 111


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 100 MLFVTLWAWLIGI 62
           M++V  W WL+G+
Sbjct: 154 MMWVFCWRWLLGV 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,481
Number of Sequences: 5004
Number of extensions: 5050
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)