Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15f14
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 29 0.46
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.5
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 26 4.3
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 7.6
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 7.6
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 25 7.6
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 25 10.0
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 25 10.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 10.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 25 10.0
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 29.5 bits (63), Expect = 0.46
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 190 IFSSDHMSHPSYWLF-HVWSLILLYYCIPVVASW 92
+ SSDH +HP W + WS++ ++ + + W
Sbjct: 63 LISSDHPAHPQNWHWAKRWSIVFMFCLMQIYVIW 96
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 166 HPSYWLFHVWSLILLYYCIPVV 101
+P YW F + L+ L+YC V+
Sbjct: 65 YPEYWAFKLVELLSLFYCAYVM 86
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +1
Query: 487 YLRRMKPDELELLFRGYADLPARSLQENKES--SQIIFPFAQSVTKAIKQENVDHDKGMA 660
Y+ R PD++ LLF Y L A + + +S +++ V ++ K
Sbjct: 129 YISRSFPDQISLLFSRYCYLIASKIDDLLDSHPNEVFKETLICVIQSAVHSQASSTKAQT 188
Query: 661 NFLH 672
FLH
Sbjct: 189 QFLH 192
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 403 ETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKP 507
E VP + +RNS R H PYL+ +P
Sbjct: 90 ENRDVPSILENYRNSKRKSHNFSSSNTPYLKLHRP 124
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 337 YAPNLHLSVIPVPHNKEQG 281
Y P S++P+P NK +G
Sbjct: 333 YGPTQEQSILPLPENKHEG 351
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 7.6
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 4/144 (2%)
Frame = +1
Query: 166 GSCDLKKKSNNSLQMNPVASGDNVTTGLSAHRL----KEELPLLVPCCEGRELQISEDLV 333
GS ++ +K+N + S + +T+G +A L KE+ V E ELQ +
Sbjct: 11 GSLEVSEKTNQPKFIKRSQSSETITSGETASELMQDEKEQSNGAVGSIEDEELQRLRE-N 69
Query: 334 RSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPDE 513
++ + A+S K +S + L + E L++ +VK + K V R +
Sbjct: 70 QASVEALSKKPESIDRELGV---EALEI-DNVVKSDEEKEDPNGASSKTVK-ARPLPAGS 124
Query: 514 LELLFRGYADLPARSLQENKESSQ 585
+ + A +PARS+ + ++Q
Sbjct: 125 VHRVTTHMAPIPARSIGSHDTTTQ 148
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 521 CCSEAMQICQREVSKRTKNRHK*SFRSHRV*LKRLNKKMWITI 649
C SE+ ++ + + + + K R HR+ L L+ K W+ I
Sbjct: 250 CSSESTRVVKSRIYQYSDENWK---RDHRLELSLLDNKRWVNI 289
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 355 SVKHDSALQCLSMSNCETLQVPPGIVKHRNSFR 453
+++H+S L+ S+ +++Q P I ++ +FR
Sbjct: 102 TIRHESMPSALAGSSAQSMQQFPSITQNEENFR 134
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 331 VRSGLSAISVKHDSALQCLSMSNCETLQVPPGIVKHRNSFRSLHRPDLKRVPYLRRMKPD 510
+ S S +VK + LS+ + + + K N H D+ + P+ + P+
Sbjct: 3 LHSKKSTSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASESHVVDVVKDPF-EQYTPE 61
Query: 511 ELELLFRGYADLPAR 555
E E+L++ D PA+
Sbjct: 62 EQEILYKQINDTPAK 76
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 508 DELELLFRGYADLPARSLQENKESSQIIFPFAQSVTKAI 624
+ELEL+ R Y ++ + +N+ S + + + KA+
Sbjct: 514 EELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAV 552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,973
Number of Sequences: 5004
Number of extensions: 55671
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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