Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f11
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   2.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   3.8  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    24   8.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    24   8.8  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +1

Query: 121 FQMIVQKKPRKNKQVKNELQREFNFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEE 300
           F+ + Q++ R+N+  +   QRE N     +     +++ + + E    E+ T SK+ + +
Sbjct: 395 FKRLKQQEDRRNENYRRRQQRESNQESESY---VDNVVIQRSVETQSTEVVTSSKSTSVD 451

Query: 301 KDLPKRARSI 330
              PK+ + I
Sbjct: 452 TKPPKKTQKI 461


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 409 NSFLRVLFSNYVFVVISIFP 350
           N+ LRV  SN++F++IS+ P
Sbjct: 415 NAQLRVFSSNWIFMLISLSP 434


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 26  NLTFIAFVEFCINCKSD 76
           NLTF  F ++C+ C +D
Sbjct: 359 NLTFDGFQDYCLMCGTD 375


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 247 DEDADYEIYTGSKNENEEKDLPK 315
           DED D E+    + E EEK+ P+
Sbjct: 269 DEDEDEELEGEKEEEEEEKEKPE 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,993
Number of Sequences: 5004
Number of extensions: 21488
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)