Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f10
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    53   4e-08
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    42   6e-05
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    28   1.5  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    28   1.5  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   1.9  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    27   3.4  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    27   3.4  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    26   4.5  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   4.5  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   7.8  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
 Frame = +1

Query: 418 WSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLMNPDNGF----VK 585
           +SC     L L + +          HH +  +  DWGF  F+    +  P   F    ++
Sbjct: 135 YSCCAQFALSLSNVQDPTVMQINTSHHRFRSEVKDWGFTRFVDLRKIAVPTPEFPVPFLE 194

Query: 586 NDSITLEAHV-IAEAPHGVSW------DSKKHTGYVGLKNQG 690
           ND I +   V + + P GV W      +SKK TGYVGLKNQG
Sbjct: 195 NDEICISVTVRVLQDPTGVLWHSFVNYNSKKETGYVGLKNQG 236


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
 Frame = +1

Query: 235 FRFIVQNVSELKEQVLSPACYVRCLPWKILVLVRNTTRNDHQPHKALGVFLQCNGECSSP 414
           F + +++  EL  + +SP   V    +KI    + T ++       L  ++    E  S 
Sbjct: 58  FTWHIKSWHELDRRAVSPQFAVGSRQFKITYFPQGTLQSAGFTSIFLE-YIPSEEEKLSN 116

Query: 415 GWSCYGLGELKLLSYKPEGTHLCRKIHHMYHCKEDDWGFAHFIAWDDLM---NPD-NGFV 582
            + C       + + +     +    H  +  +  DWGF  F     L+    PD    V
Sbjct: 117 KYGCCCQFAFVISNPRKPSLSVANSAHCRFSPEIVDWGFTQFAELKKLLCRQAPDVPPIV 176

Query: 583 KNDSITLEAHV-IAEAPHGVSW------DSKKHTGYVGLKNQG 690
           ++ ++ L A+V I + P GV W      DSK  TGYVGLKNQG
Sbjct: 177 EDGALLLTAYVRILKDPTGVLWHSFNDYDSKIATGYVGLKNQG 219


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 463 PEGTHLCR-KIHHMYHCKED--DWGFAHFIAWDDLMNPDN 573
           P+G HL    ++H Y   E   DW + HF++   L++ DN
Sbjct: 557 PDGDHLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADN 596


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 130 AEMIEASSVDNATAPLPINHDFTPQDEDMARSE 228
           A MI   S ++      I +DFTP++E+  R E
Sbjct: 122 ANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKE 154


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 547 WDDLMNPDNGFVKNDSITLE 606
           W D+++PD  FVK  S+  E
Sbjct: 93  WSDILDPDADFVKQSSLAFE 112


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 225 GGHFPFYSSKCQRVERASAIP 287
           GG FP+  S+CQ +   S IP
Sbjct: 127 GGKFPYVFSECQAIHARSFIP 147


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = -2

Query: 221 RAISSSCGVKS*LMGRGAVALSTLLASIISAANLISYFNLL 99
           + I S   V   L G   + L+T   S+I+A  LISYFNLL
Sbjct: 192 KLIDSKDFVLGFLAGLSVLLLNT--GSLITAKPLISYFNLL 230


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 249 NYKTESGLRTGHIFVLRCEVMING*RSRCIIDAACFNHLSSESYILLQFTVHY 91
           NYK + G    H+F LR  ++    +    I+ A   H S  + +   FTV++
Sbjct: 206 NYKAKDG----HLFFLRTGILWGFRKPILFIELASIQHFSYSNVLQRTFTVNF 254


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -3

Query: 520 RLLCNGTCDEFSCISAYPQAYRIGVLVRPIHNKTTQANCIR---RCTEGIRLKLCVVGDR 350
           ++L +   ++ SCI    +   IG L   I    ++   IR    C +GI  ++ +  D+
Sbjct: 34  KILHDSVGNKISCIGKSTKRIAIGTLDGRIVILNSRLQLIRDFYACEQGIVQQIYITADQ 93

Query: 349 FS*CCV 332
            + CCV
Sbjct: 94  SALCCV 99


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 127 AAEMIEASSVDNATAPLPINHDFTPQDEDMARSEATFRFIVQN 255
           A + + ASS+DN++ P     D     E++AR+  + + + QN
Sbjct: 133 AIDALRASSIDNSSDPAKFRSDL----ENIARTTLSSKILSQN 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,264
Number of Sequences: 5004
Number of extensions: 63935
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)