Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f09
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   3.3  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    26   4.3  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.3  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   5.7  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    26   5.7  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   5.7  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   7.5  
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    25   9.9  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.9  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 435 SSAFNQI*NAEYKPKYVEGYPSLGFASEIRCYFVFGYPK-YGLIACTVEKDCVIIKVN 265
           SS F ++     +P  V G  S+ F   I C+ +  +   YG I CT+ +    IK+N
Sbjct: 387 SSLFFKVLKIHRRPIIVFGSLSIIFI-HIYCFKITSWVNLYGWITCTIARTLSFIKLN 443


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 271 FYNYTVFFNGTSYKTIF--WISENKIAADFRSKTKAWITLHIFWFILSILNLIESTRSRL 444
           F +Y  F+   SY +IF  W +      D      A     I WFI + L L+ + RS L
Sbjct: 155 FGSYGCFW--LSYASIFIPWFNIQNSYDDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTL 212

Query: 445 SHFSL 459
           + FSL
Sbjct: 213 AFFSL 217


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 277 NYTVFFNGTSYKTIFWISENKIAADFRSKTKAWITLH 387
           N ++  +G S+    W S+  + +DF+   KA +  H
Sbjct: 28  NCSLVIDGPSFAFWLWFSQGIVCSDFQGYQKAVLDFH 64


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +1

Query: 238 LYDPVACNRVYF-YNYTVFFNGTSYKTIFWISENKIAADFRSKTKAWITLHIFWFILSIL 414
           LY      RV+  +NY  F+   S     W+          S  +AWIT+ + + I + +
Sbjct: 44  LYPVPKSQRVWGPWNYVAFWLADSVNVNTWMIAGTAVESGLSWWEAWITVWVGYTIAAFI 103

Query: 415 NLIESTRSRLSHFS 456
             I      + H S
Sbjct: 104 LTIAGRAGAVYHIS 117


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 531 INQEQNSVNHVDSDHCCSDYGEGQQREVRE 442
           I ++ N V+H DS H   +  +    EV+E
Sbjct: 270 IKEKSNEVDHKDSQHVVDEVAQTSPPEVKE 299


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
 Frame = -3

Query: 375 PSLGFASEI----RCYFVFGYPKY 316
           PS+ FA E+    RCY + G+P++
Sbjct: 70  PSIQFAQEVSEQYRCYTIIGFPEF 93


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 103 LAFWSMIAILIQTIVCLILTWPTLVCTYSPNIEDLSE 213
           LA W+ + + I  +  L+ TW   V   +P +  L+E
Sbjct: 309 LAIWADVGLTIDCLFKLVQTWKYSVGISTPYLRTLNE 345


>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 221 RVASLRSSMLGEYVQTRVGQV 159
           R ASL+ SMLG+Y  +  G++
Sbjct: 270 RPASLKESMLGQYTTSEDGKI 290


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 181 TYSPNIEDLSEATLIKVLYLYDPVACNRVYFYNYTV 288
           TYSPN   L+ ++   +LY YD      + F   T+
Sbjct: 144 TYSPNGNFLAVSSCNGILYFYDTQTRELIKFLTNTI 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,888
Number of Sequences: 5004
Number of extensions: 53472
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)