Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f09
         (671 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0015 + 4965894-4966214,4966339-4966387,4966504-4966890,496...    29   4.5  

>03_02_0015 +
           4965894-4966214,4966339-4966387,4966504-4966890,
           4966976-4967034,4967128-4967241,4967344-4967460,
           4967558-4967684,4967764-4968050,4968148-4968338,
           4968801-4968886,4968975-4969051,4969161-4969304
          Length = 652

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 118 MIAILIQTIVCLILTWPTLVCTYSPNIEDLSEATLIKVLYLYD 246
           M  I++ T+V L L W T +  Y+PN   +S   +  VL L+D
Sbjct: 409 MSNIVMSTVVLLALLWITPLFKYTPN-ATISSIIISAVLGLFD 450


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,265
Number of Sequences: 37544
Number of extensions: 303185
Number of successful extensions: 760
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)