Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f08
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...   211   7e-56
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    62   8e-11
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    52   7e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    50   2e-07
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    43   4e-05
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    33   0.034
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    27   3.0  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.2  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   9.0  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   9.0  

>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score =  211 bits (515), Expect = 7e-56
 Identities = 101/162 (62%), Positives = 119/162 (73%), Gaps = 2/162 (1%)
 Frame = +2

Query: 149 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDTGXXXXXXXXXXXXK 328
           LDEGDI LLKSY  G Y + +  ++E  + V+KR+N+  GIKESDTG            +
Sbjct: 27  LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADR 86

Query: 329 QTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIEEGMRVGV 502
           Q +  EQPLQVARCTKII  + +  K  Y+IN+KQ AKFVV L + V+PTDIEEGMRVG 
Sbjct: 87  QRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGC 146

Query: 503 DRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQI 628
           DRNKY I +PLPPKIDP+VTMMQVEEKPDVTY DVGGCKEQI
Sbjct: 147 DRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQI 188


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 29/75 (38%), Positives = 46/75 (61%)
 Frame = +2

Query: 404 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 583
           K ++ V    K+VVD+   +   +I+  +RV +  + YQ+   LP K+DP V++M VE+ 
Sbjct: 80  KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKI 139

Query: 584 PDVTYSDVGGCKEQI 628
           PD TY  VGG ++QI
Sbjct: 140 PDSTYEMVGGLEKQI 154


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 23/75 (30%), Positives = 44/75 (58%)
 Frame = +2

Query: 404 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEK 583
           ++I+      ++VV  +++V  + + +G+RV +D     I   LP ++DP V  M +E+ 
Sbjct: 67  RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDP 126

Query: 584 PDVTYSDVGGCKEQI 628
            D++++ VGG  EQI
Sbjct: 127 GDISFAGVGGLNEQI 141


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 23/56 (41%), Positives = 34/56 (60%)
 Frame = +2

Query: 461 VAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQI 628
           V P ++  G  +GV+++ Y I   LP + D  V  M+V+EKP   YSD+GG  +QI
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQI 194


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 19/65 (29%), Positives = 39/65 (60%)
 Frame = +2

Query: 431 AKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVG 610
           + +VV +  ++    ++    V + R+   +   LPP+ D +++M++ +E+PDV+Y+DVG
Sbjct: 78  SNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVG 137

Query: 611 GCKEQ 625
           G   Q
Sbjct: 138 GLDVQ 142


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 33.1 bits (72), Expect = 0.034
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +2

Query: 434 KFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGG 613
           ++ V +   V    +E G  V +      I   L    DP + +M++++ P  +Y+D+GG
Sbjct: 136 EYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGG 195

Query: 614 CKEQI 628
            + QI
Sbjct: 196 LESQI 200


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 440 VVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCK 619
           ++DL +     ++ + + V +D  ++ +    P  +  TV      E P+V + D+GG +
Sbjct: 449 MIDLDEDEIDAEVLDSLGVTMDNFRFALGSSNPSALRETVV-----EVPNVRWEDIGGLE 503

Query: 620 E 622
           E
Sbjct: 504 E 504


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = -3

Query: 492 LMPSSISVGATESCKSTTNFANCFTLIMYFGSFESALMIFVHRATCSGCSFCSVCLSAAR 313
           LM     +G  ES    T  A   T+ M+F   E AL+      +C GC+  +  ++   
Sbjct: 180 LMALRFFLGLVESSLLPTMEA---TIGMFFPHSEQALLQPFFYISCYGCNIPAGFIAYGV 236

Query: 312 SHKAGGANPVSDSLMPVSSLTLFITV 235
            +     +P    ++ V  +T F+T+
Sbjct: 237 QYAKNTISPWKLFMIIVGGITFFLTI 262


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 81  SGIFNIYSHQAINFTIQHP 25
           SGI +   HQA+N  + HP
Sbjct: 652 SGILSFTVHQAVNLQMNHP 670


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = -2

Query: 277 LFDACQFINPLHYCLNSFFYFLNDFCVLSLAV*LQKRNI 161
           L+ +C F   + Y LNS FY L  + + ++ + + ++ +
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,189
Number of Sequences: 5004
Number of extensions: 46557
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)