Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f07
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.7  
SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   6.5  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    25   6.5  

>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 428 IEDAAEDIKVENNVIKFENTSDVQTVHSS--NVPVIIDS 538
           ++D +E+ +VE N + F+N S   T  S+  + P +I S
Sbjct: 340 VDDVSEESQVEPNTLIFQNFSSPSTSLSAPKDTPAVIQS 378


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 195 WSPCSSLSHMVRRSTIQLHFQVHNISLIKICIMFN-KATQVALQFFC 58
           +S  + L H   + T  L+++     L K+C++FN + T++ L F C
Sbjct: 120 YSTKNQLVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLAFEC 166


>SPCC576.19c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 198 LWSPCSSLSHMVRRSTIQLHFQVHNISLIKICIMFNKATQVAL 70
           L+ PC SL      +++ +HF ++ IS I   ++   A +V +
Sbjct: 58  LFLPCRSLEFRASANSLSVHFLLNVISAILSMLIERYAVEVIM 100


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 416 DFFDIEDAAEDIKVENNVIKFENTSDVQTVHSSNVPVIIDSQSIKEELKEDTWRDTD 586
           D +D+ED  EDI+ ++   K   T + Q   +       D+  +++E ++D   D D
Sbjct: 327 DDYDVEDREEDIRPQHAKGKSRITLNTQGPITQQGSSNADADELEDEDEDDDEFDED 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,004,865
Number of Sequences: 5004
Number of extensions: 32216
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)