Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f07
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785...    36   0.019
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    28   6.7  
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    27   8.9  

>06_03_0924 -
           25976629-25976979,25977471-25978424,25978512-25978565,
           25979135-25979254,25979357-25979532,25979624-25980107,
           25980541-25980744,25981671-25981877,25982179-25982271,
           25982433-25982621,25983364-25983423,25983591-25983927,
           25984195-25984432,25984614-25984816,25985549-25986554,
           25987125-25987290,25987715-25987824,25987944-25988195,
           25988360-25988402,25988488-25988550,25989512-25989624,
           25990787-25990838
          Length = 1824

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 173 DSDEQGDHSRSGLDLTGFLFGNIDERGQLEDDGLLDGESK 292
           D DE  D    G    GF+FGN+D+ G L+ D  LD ++K
Sbjct: 20  DDDEDYDEPGGGNHFLGFMFGNVDDSGDLDAD-YLDEDAK 58


>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 479 ENTSDVQTVHSSNVPVIIDSQSIKEELKEDTWRDTDIA 592
           E   +  TV    V    D + ++EE  E+ W D+D+A
Sbjct: 24  EEEEEEATVRPVEVAESKDQEEVEEEEDEEEWSDSDVA 61


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 168 MVRRST--IQLHFQVHNISLIKICIMFNKATQVALQFFCFKWYYSLFMSVCCL 16
           +VR+ST  I +   V+N+  I   +   KA Q+ L   C  WY  + +  C L
Sbjct: 24  LVRKSTFIIIIIIHVNNLQWILALLPLIKALQMGLS--CLFWYSCIHLQTCSL 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,612
Number of Sequences: 37544
Number of extensions: 192937
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)