Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f07
         (611 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein.           42   0.002
AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II,...    42   0.002
AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor R...    42   0.002

>D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein.
          Length = 1872

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 167 MCDSDEQGDHSRSG-LDLTGFLFGNIDERGQLEDDGLLDGESK 292
           M D+D   D +  G   L GFLFGNI+  GQLE + +LD E K
Sbjct: 21  MSDTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGESVLDDECK 63


>AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II,
           TATA box binding protein (TBP)-associated factor, 250kD
           protein.
          Length = 1893

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 167 MCDSDEQGDHSRSG-LDLTGFLFGNIDERGQLEDDGLLDGESK 292
           M D+D   D +  G   L GFLFGNI+  GQLE + +LD E K
Sbjct: 21  MSDTDSDEDSAGGGPFSLAGFLFGNINGAGQLEGESVLDDECK 63


>AF390562-1|AAN40840.1| 1826|Homo sapiens TBP-associated factor RNA
           polymerase 1-like protein.
          Length = 1826

 Score = 41.9 bits (94), Expect = 0.002
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 167 MCDSDEQGDHSRSG-LDLTGFLFGNIDERGQLEDDGLLDGESK 292
           M DSD + D S  G   L G LFGNI   GQLE + +LD E K
Sbjct: 20  MSDSDSEEDSSGGGPFTLAGILFGNISGAGQLEGESVLDDECK 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,202,656
Number of Sequences: 237096
Number of extensions: 1086081
Number of successful extensions: 1930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1930
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)