Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f06
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    26   4.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   7.5  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    25   9.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.9  

>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 326 AGIDPAIHCWYALQGTP 276
           A +DP++H W+ + G+P
Sbjct: 272 APVDPSVHKWFYISGSP 288


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 228 FITSSCCVFKAHRDNLWCAL 287
           F+  S C F+A R   WCAL
Sbjct: 376 FLEPSLCHFQADRGRDWCAL 395


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 260 AQGQSVVCPAVRTSSGWLDLFPLPCRKHSECRVMSKQHVCCNGFCTKGIKATAAIQSTTP 439
           + G +++  A  T+S +          +S+  ++S   V  +G C K IKATA+ +S   
Sbjct: 279 SHGNTLLAKAAGTASEYKATAVADLTPYSDASLLS---VVISGSCPKAIKATAS-ESFKA 334

Query: 440 VQVLSS 457
           ++ LSS
Sbjct: 335 LKSLSS 340


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 329 PCRKHSECRVMSKQHVCCNGFCTKGIKAT 415
           PC K   C     QH+C  G C + ++A+
Sbjct: 588 PCNKKLSCGNHFCQHMCHRGPCPRCLEAS 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,927
Number of Sequences: 5004
Number of extensions: 33685
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)