Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f04
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148...    27   3.0  
01_01_0998 - 7894254-7894515,7895133-7895270,7896049-7896246,789...    26   3.9  
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626...    25   6.8  
02_03_0357 + 18075171-18077240                                         25   6.8  
05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102...    25   9.0  

>01_06_1596 -
           38514278-38514346,38514547-38514705,38514776-38514898,
           38514985-38515047,38515248-38515352,38515487-38515586,
           38515716-38515786,38516329-38516385,38516830-38516907,
           38516975-38517049,38517180-38517230,38517453-38517466,
           38517516-38517616,38517703-38517764,38518346-38518372,
           38518901-38519581
          Length = 611

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 234 CHTNNSWITLIISIQNNLPVSPINIL 157
           C TN+ W+      QNN+ +   N+L
Sbjct: 258 CSTNSGWLDAASDDQNNIEIDKSNVL 283


>01_01_0998 -
           7894254-7894515,7895133-7895270,7896049-7896246,
           7896334-7896786,7896877-7897098,7898100-7898227,
           7899325-7899432
          Length = 502

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 189 NNLPVSPINILHYFYPIFDLCYCMFI 112
           +NLP+  I I+    P+F L  C+F+
Sbjct: 184 SNLPIHVIYIIFSALPLFQLISCIFV 209


>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
            24963146-24963943,24964140-24964422,24964500-24964951,
            24965744-24965870,24965950-24966074,24966188-24966858,
            24966976-24967093,24967177-24967293,24967564-24967658,
            24968152-24968303,24968858-24968913,24969001-24969218,
            24969842-24970239,24970345-24970628,24970730-24970836,
            24970882-24970968,24971729-24971990,24972228-24972503,
            24973197-24973254,24973437-24973756,24973889-24973999,
            24974183-24974350,24974494-24974622,24974731-24974820,
            24974934-24975040,24975133-24975281,24975584-24975666,
            24975749-24975844,24975957-24976079,24976180-24976263,
            24976371-24976511,24976652-24976951,24977386-24977453,
            24977540-24977642,24979363-24979524,24979613-24981230,
            24981270-24981661,24981689-24981991,24982078-24982161,
            24982296-24982448,24982678-24982841,24982915-24983062,
            24983209-24983331,24983409-24983496,24983686-24983867
          Length = 4177

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 240  NCCHT-NNSWITLIISIQNN 184
            NCC   NNS +TL+   QNN
Sbjct: 1681 NCCKIENNSRLTLVCHFQNN 1700


>02_03_0357 + 18075171-18077240
          Length = 689

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 144 GKNNVKYLLVTPEDYFESKLS 206
           G+N+ KY+  TPED  ES+LS
Sbjct: 653 GRNSGKYIKYTPED-LESQLS 672


>05_04_0213 +
           19109369-19109581,19109803-19109873,19110175-19110229,
           19110441-19110626
          Length = 174

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 237 CCHTNNSWITLIISIQNNLPVSPINILHYFYPIFDLCYC 121
           CC T++ WI      QN  P    ++L  F PI   C C
Sbjct: 95  CCTTSSKWIFGRKHTQNIEPQEWASLLVDFRPIEAGCCC 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,478,087
Number of Sequences: 37544
Number of extensions: 83695
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)