Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15f04
(283 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine re... 28 0.90
AF039050-11|AAC47941.1| 333|Caenorhabditis elegans Seven tm rec... 27 1.6
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 26 3.6
AF038623-1|AAB94156.1| 346|Caenorhabditis elegans Seven tm rece... 26 4.8
Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical pr... 25 6.3
U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of ... 25 6.3
AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium cha... 25 6.3
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 25 6.3
AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical ... 25 6.3
AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine re... 25 8.4
AC024882-2|AAF60935.2| 344|Caenorhabditis elegans Seven tm rece... 25 8.4
>AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine
receptor, class w protein143 protein.
Length = 365
Score = 28.3 bits (60), Expect = 0.90
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 204 IISIQNNLPVSPINILHYFYPIFDLCYCMFI*DQYY 97
+I I+ L S INI+ F IFD+C +F Q Y
Sbjct: 56 LILIRKPLRSSSINIIMAFISIFDICSMLFRMKQSY 91
>AF039050-11|AAC47941.1| 333|Caenorhabditis elegans Seven tm
receptor protein 83 protein.
Length = 333
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -2
Query: 150 FYPIFDLCYCMFI*DQYY*TICELMGSFK*I*EILSHI 37
FYPIFD FI YY + +L G K +I S I
Sbjct: 295 FYPIFDAIATTFIIKDYYRGVLKLFGLAKQTPDISSTI 332
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 204 IISIQNNLPVSPINILHYFYPIFDLCYCMFI*DQYY 97
+I I L S INI+ F IFD+C + Q Y
Sbjct: 56 LILIHKPLRSSSINIIMAFIAIFDICSMFYKMKQVY 91
>AF038623-1|AAB94156.1| 346|Caenorhabditis elegans Seven tm
receptor protein 170 protein.
Length = 346
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 174 SPINILHYFYPIFDLCYCMFI*DQY 100
+PI +++ YP D C+F D Y
Sbjct: 288 APITVIYAVYPALDPLPCLFFVDNY 312
>Z82276-1|CAB05238.1| 319|Caenorhabditis elegans Hypothetical
protein K03D3.1 protein.
Length = 319
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 159 LHYFYPIFDLCYCMFI 112
+H+FY I + YC+F+
Sbjct: 62 VHHFYKIVKISYCLFV 77
>U56964-1|AAB54033.2| 555|Caenorhabditis elegans Twik family of
potassium channelsprotein 16 protein.
Length = 555
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 166 KYFTLFLPYFRLVLLHVYLGSILLNNL*TN 77
K FTL LVLL+ +LG + + + TN
Sbjct: 21 KPFTLHCSLLMLVLLYSFLGGFIFDRIETN 50
>AF083645-1|AAC32856.1| 555|Caenorhabditis elegans potassium
channel subunit n2P16 protein.
Length = 555
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 166 KYFTLFLPYFRLVLLHVYLGSILLNNL*TN 77
K FTL LVLL+ +LG + + + TN
Sbjct: 21 KPFTLHCSLLMLVLLYSFLGGFIFDRIETN 50
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -2
Query: 150 FYPIFDLCYCMFI*DQYY*TICELMG 73
FYPIFD F+ YY I + G
Sbjct: 295 FYPIFDALATTFVIKDYYRGIMRIFG 320
>AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical
protein C08E3.8 protein.
Length = 431
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 105 DPK*TCNNTSRK*GKNNVKYLLVTPEDYFE 194
+P TC R ++N K VT EDY E
Sbjct: 152 EPTCTCGRRIRTSDEDNRKEFFVTDEDYIE 181
>AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine
receptor, class j protein16 protein.
Length = 340
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -2
Query: 225 NNSWITLIISIQNNLPVSPINILHYFYPIFDLCY 124
N ++ LI++ Q + + L +F+ IFD+ Y
Sbjct: 22 NPIFMYLIVTEQKSSSIGKYRFLMFFFAIFDMSY 55
>AC024882-2|AAF60935.2| 344|Caenorhabditis elegans Seven tm
receptor protein 156 protein.
Length = 344
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 171 PINILHYFYPIFDLCYCMFI*DQYY*TICELMGSFK*I*EIL 46
P++IL + + D +F+ D+Y + E G F + E++
Sbjct: 287 PLSILFSIFSVMDSIRIIFLVDEYRNALFEFFGGFCCVNEVV 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,497,450
Number of Sequences: 27780
Number of extensions: 97578
Number of successful extensions: 231
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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