Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15f02
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 85 1e-17
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 30 0.35
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 28 1.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 25 7.5
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 25 9.9
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 9.9
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 9.9
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 9.9
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 84.6 bits (200), Expect = 1e-17
Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 29/186 (15%)
Frame = +2
Query: 188 WSLLKNAIQEIQKKNNSGLSFEELYRNAYTMVLHKHGERLYTGLKEVVTQHLETKVREDV 367
W +L+ AI +I +K+ S LSFEELYRNAY +VLHK+GE+LY +++V+ L+ + +
Sbjct: 26 WEVLQRAIGDIFQKSTSQLSFEELYRNAYILVLHKYGEKLYNHVQDVIRSRLKEETVPAI 85
Query: 368 LHS-----LHNGFLQTLNN-----AWT------------------DHQTSMVMIRDILMY 463
+ L N L N +W+ DH SM MI +L Y
Sbjct: 86 YKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISSVLKY 145
Query: 464 MDRVFVQQNEVDNVYNLGLIIFRDQVVRYGC-IRDHLRQTLLELVARERRGEVVDRLAIR 640
+D+V+ + + V G+ IFR+ V+ I + +T+L LV ER+G ++R I
Sbjct: 146 LDKVYSKSADKVPVNENGIYIFREVVLLNSFEIGEKCVETILILVYLERKGNTINRPLIN 205
Query: 641 NACQML 658
+ ML
Sbjct: 206 DCLDML 211
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -1
Query: 571 KMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVE 401
+ S + + L SEDN+P I ++V I +N V I++ DH +S CI++
Sbjct: 26 RFFSVSYASRKLASEDNKPSIQEVVRGI--PQNRVRNWAVIAHIDHGKSTLSDCILK 80
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 83 IKMIRKFKVW--NFSEPYYQMYPDTWMTMDEKYVERIWSLLKNAIQEIQKKNNSGLSFEE 256
+ + R+F W S+ D+ +T+DE +++ ++ ++++ NS +SF +
Sbjct: 286 LSLNRRFYAWLMGLSKDTELSISDSSITVDENTLQQNMAIFFEGVKDLLSSKNSLMSFYK 345
Query: 257 LYRNAYTM 280
+R Y +
Sbjct: 346 AFRILYAL 353
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = -1
Query: 574 TKMISNASITNNLISEDNEPKIVDIVNFILLNKNSVHIHQNISYHDHAGLMVSPCIVESL 395
T S N + DN+P + V F + K + H++Q S H+ L+ P ++
Sbjct: 635 TVFASETENENTVFIRDNKPTMYTPVYFAEVGKVNCHVYQLSSLPVHS-LITGPAVIVDT 693
Query: 394 *ETIV 380
+T++
Sbjct: 694 TQTLL 698
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 222 CISCMAFFNKLHIRSTYF 169
C+ C A +LHI++ YF
Sbjct: 274 CLMCAAALKQLHIKAVYF 291
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = +2
Query: 533 DQVVRYGCIRDHLR-QTLLELVARE-RRGEVV 622
D+++RYGC R + Q++ E VAR+ RG V
Sbjct: 230 DEMLRYGCTRLEIGVQSVYEDVARDTNRGHTV 261
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -3
Query: 389 NHCVMNAIHLL 357
NHCVMNAI+L+
Sbjct: 210 NHCVMNAINLV 220
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 169 EVCGAYMELVKECHTRNTKEKQLWT 243
E CGA VK+C R K WT
Sbjct: 114 ENCGAMSHKVKDCMERPRKRGARWT 138
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 614 RRDVHEQLALAVSDEDDLECIHNEQLDLGR 525
++D HE + VSDEDD I ++ L+ R
Sbjct: 28 QKDKHENVGENVSDEDDGNYIASKLLESNR 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,958
Number of Sequences: 5004
Number of extensions: 65433
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -