Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15f01
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    33   0.025
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.5  

>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 29/115 (25%), Positives = 41/115 (35%)
 Frame = +3

Query: 261  VTEIILATAARVSVTEIPV*VTATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASADF 440
            VT    +T     V + P  VTAT   ++ V     G   T  VT           +   
Sbjct: 858  VTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTE-TSTVTVTPTGTSTGTTTVVI 916

Query: 441  QGTRAMEGTDRDIRAAVPVTRATNLDTTNTDPVSTGTPRPTLVISLEATATATAT 605
            Q    +  T+ DI      T  T  +T+      TGT   T  + ++   T TAT
Sbjct: 917  QTPTTVTATETDI--VTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTAT 969



 Score = 33.5 bits (73), Expect = 0.025
 Identities = 29/115 (25%), Positives = 41/115 (35%)
 Frame = +3

Query: 261  VTEIILATAARVSVTEIPV*VTATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASADF 440
            VT    +T     V + P  VTAT   ++ V     G   T  VT           +   
Sbjct: 902  VTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTE-TSTVTVTPTGTSTGTTTVVI 960

Query: 441  QGTRAMEGTDRDIRAAVPVTRATNLDTTNTDPVSTGTPRPTLVISLEATATATAT 605
            Q    +  T+ DI      T  T  +T+      TGT   T  + ++   T TAT
Sbjct: 961  QTPTTVTATETDI--VTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTAT 1013



 Score = 32.3 bits (70), Expect = 0.057
 Identities = 27/108 (25%), Positives = 38/108 (35%)
 Frame = +3

Query: 282  TAARVSVTEIPV*VTATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASADFQGTRAME 461
            T     V + P  VTAT   ++ V     G   T  VT           +   Q    + 
Sbjct: 821  TGTTTVVIQTPTTVTATETDIVTVTTGYTGTE-TSTVTVTPTGTSTGTTTVVIQTPTTVT 879

Query: 462  GTDRDIRAAVPVTRATNLDTTNTDPVSTGTPRPTLVISLEATATATAT 605
             T+ DI      T  T  +T+      TGT   T  + ++   T TAT
Sbjct: 880  ATETDI--VTVTTGYTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTAT 925



 Score = 29.9 bits (64), Expect = 0.30
 Identities = 31/120 (25%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
 Frame = +3

Query: 264  TEIILATAARVSVTEIPV*VTATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASADFQ 443
            T+I+  T          V VT T  S     V+      T+  T+ DI  V    +    
Sbjct: 1015 TDIVTVTTGYTGTETSTVTVTPTGTSTGTTTVV-IQTPTTVTATETDIVTVTTGYTGTET 1073

Query: 444  GTRAMEGTDRDI-RAAVPVTRATNLDTTNTDPVS-----TGTPRPTLVISLEATATATAT 605
             T  +  T        V +   T +  T TD V+     TGT   T+ ++   TAT T T
Sbjct: 1074 STVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGTATGTTT 1133


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 429 SADFQGTRAMEGTDRDIRAAVPVTRATNLDTTNTD-PVSTGTP 554
           S DF+ T  M G + D+    P     NL+ T TD P+S   P
Sbjct: 425 SKDFKETEDMNGAE-DMHGRAPQITKDNLNLTTTDSPMSEAEP 466


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
 Frame = +3

Query: 324 TATPVSVIRVKVIRAGLAVTMVVTKADIKAVIREASADFQGTRAMEGTDRDIRAAVP-VT 500
           T T VS     +  +G       TK D   V     +      A + T   + + V  VT
Sbjct: 378 TVTSVSDEPTTITASGATSVTTTTKTDFDTVTTTIVSTSTLISASDSTSIIVSSYVSTVT 437

Query: 501 R--ATNLDTTNTDPVSTGTPRPTLVISLEATATATAT 605
           +  +T + TT    +ST   +PT  ++  + +  +++
Sbjct: 438 QPASTRVQTTTVSSISTSVKQPTASVASSSVSVPSSS 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,564,713
Number of Sequences: 5004
Number of extensions: 25460
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)