Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15e24
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    31   0.14 
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   3.0  
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    25   6.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   6.9  
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   6.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   9.1  
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    25   9.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.1  
SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    25   9.1  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.1  

>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 533 HIHCQPSAWDFCNKHD-YRIKMCTH 604
           HIHC+   + FCN H  Y+IK+  H
Sbjct: 155 HIHCRKCGYIFCNFHSMYQIKLSIH 179


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
 Frame = +2

Query: 38  TEWRRNTGRRVRDLYEQLVDLTNQAARLNNFTDASAYWMFPYETSNMRQEVDDVWQQIKP 217
           +E RR T R   + + Q      +++  NNF DAS+     +  +  R+          P
Sbjct: 141 SERRRETRRHQNNQHSQQYSSQERSSSYNNFEDASSPQSSYHTPTKRRKNAVPRKSSSPP 200

Query: 218 LYDQLHA---YVRRRLREAYGPERISRSAPLPAH 310
           L    HA     RR +R +    + +   PL  H
Sbjct: 201 LSSTKHAPQSTERRPVRRSESRLKQTNGEPLVKH 234


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 104 NQAARLNNFTDASAYWMFPYETSNMRQEVDDVWQQIKPLYDQLHAYVRRRLREAYGP 274
           ++A R+       ++  F Y    + Q +D   +Q   L D  HA  RRR+    GP
Sbjct: 6   DEAVRVAELRKKRSFRTFAYRGVELEQLLDLSAEQ---LVDLFHARARRRMLRGLGP 59


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 5   SRDWDELQHIWTEWRRNTG 61
           SRD D +  IW+E+ +NTG
Sbjct: 487 SRDADCVVKIWSEYTKNTG 505


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +2

Query: 14  WDELQHIWTEWRRNTGRRVRDLYEQLVDLTNQAARLNNFTDASAYWMFPYETSNMRQEVD 193
           WD  +  W  +     ++V + YE+L +L N+     + ++ SA       T +  ++  
Sbjct: 155 WDAKRDRWNGYDATDYKKVIERYEKLDELQNKGEENRDASENSAVKASRNSTVSGSEDSA 214

Query: 194 DVWQQIKPLYDQLHAYVRRRLRE-AYGPERISRSAPLPAHILGDMWG 331
            +      + + + AY+R   +   Y P+  S       H++ D  G
Sbjct: 215 SITTPSLRMREDVVAYLRADNKNLQYEPKSRSMRDETGYHMVDDSSG 261


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 2   HSRDWDELQHIWTEWRRNTGRRVRDLYEQLVDLTNQAARLN 124
           +S+DW ++      W    GR+    Y+  V  TN +   N
Sbjct: 497 YSKDWFDILRQTLNWNDRKGRQRSSRYKSHVHKTNTSEEQN 537


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +2

Query: 338 WSGIVPFTLPYPGKNLLDVSQEMAKQGFTPLTMFQL 445
           WS  +PF +P+P  + +  + E+ + G    T ++L
Sbjct: 209 WSMDLPFEIPFPENSEIPSTFELNRSGTICSTKYEL 244


>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 513 WTNLRTDTSTASLLLGTFAISTTIASK 593
           WT+   D   A ++   F  ST +ASK
Sbjct: 390 WTHAEVDAKLAGIMQNIFEQSTDVASK 416


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 8   RDWDELQHIWTEWRRNTGRRVRDLYEQLVDLTNQAARLNNFTDASAYWMFPYETSN 175
           R   EL+H+W +      R V+ + EQ  +L      L  F     YW+   E S+
Sbjct: 324 RQHPELEHVWEKLEEEAPREVKQI-EQPKEL---VLNLLPFQREGVYWLKRQEDSS 375


>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 104 NQAARLNNFTDASAYWMFPYETSNMRQEVDDVWQQIKPLYDQLHAYVRRRLREAYGP 274
           ++A R+        +  F Y    + Q +D   +Q   L D  HA  RRR+    GP
Sbjct: 7   DEAVRVAELRKKRTFRTFAYRGVELEQLLDLSAEQ---LVDLFHARARRRMLRGLGP 60


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 170 SNMRQEVDDVWQQIKPLYDQLHAYVRRRLREAYGPE 277
           +N  +E+D  W Q++ LY    + ++    + Y  E
Sbjct: 834 NNQLREIDSYWAQMRLLYSPFESEIKGTDSDVYNHE 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,597
Number of Sequences: 5004
Number of extensions: 60980
Number of successful extensions: 162
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)