Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte15e24
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647 33 0.25
03_06_0622 - 35151980-35152492 29 2.3
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 29 4.1
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 28 5.4
02_05_0584 - 30135768-30135790,30136104-30136866 28 5.4
11_06_0125 - 20356683-20357071,20359531-20362285 28 7.1
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 7.1
09_06_0054 - 20542616-20542690,20543167-20543286 27 9.4
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336... 27 9.4
02_01_0781 - 5824528-5824811,5824943-5825141 27 9.4
02_01_0351 - 2535305-2535627,2535707-2535842,2535942-2535977,253... 27 9.4
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234 27 9.4
>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
Length = 263
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 122 NNFTDASAY-WMFPYETSNMRQEVDDVWQQIKPLYDQLHA--YVRRRLREA 265
N D +A+ W F YE + E+ W KPL+D+ HA RRR REA
Sbjct: 44 NKGYDTNAHGWRFAYELTFPEGEIPSDWGYSKPLWDE-HAKDEARRRHREA 93
>03_06_0622 - 35151980-35152492
Length = 170
Score = 29.5 bits (63), Expect = 2.3
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Frame = -3
Query: 608 PR-VCTF*CDSRAYCKSPKQKAGSGCVCPEVGPTRLGPKSQEAWQTYSWTRSTLQLIETL 432
PR VC + A C K+KA G PE P P+ +EA + + +L+ L
Sbjct: 26 PRAVCAEARTAAAKCSGSKRKADDGVDHPEAPPPSARPRQEEAGSEHD--EQSSELLPEL 83
Query: 431 *VE*NPASPFPERHLASFSQGKEG*KARYPTSSVP 327
++ ++P E ++FS RY + P
Sbjct: 84 DLDALLSAPMDENLESTFSTAATEQYMRYLLNDEP 118
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 579 SCLLQKSQAEGWQWMCLSGGWSNTLRAQKSGGMA 478
+C + +GW+W CLSG R GG A
Sbjct: 6 TCNPRTFSGDGWRWWCLSGARRAAARPLVGGGGA 39
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 122 NNFTDASAYWMFPYETSNMRQEVDDVWQQIKPLYDQLHAYVRRRLREAYGPERIS--RSA 295
NN T YW +N E DD + KP+ L+ RL ++ GP I +
Sbjct: 282 NNPTSQGKYWSKDETLTNDNDEADD--KDDKPIKGTLYEREVNRLLDSLGPRFIDWWWNT 339
Query: 296 PLP 304
PLP
Sbjct: 340 PLP 342
>02_05_0584 - 30135768-30135790,30136104-30136866
Length = 261
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Frame = +2
Query: 296 PLPAHILGDMWGQSWSGI-VPFTLPYPGKNLLDVSQEMAKQGFTPLTMFQLAEEYFVSMN 472
PLPAH SG +PF LP+P +Q K+ TPL +Y +
Sbjct: 131 PLPAHGSPAAGAPPSSGSGLPFPLPFPLPQPSSPAQPQPKECMTPLMSVMPCADYLTNTA 190
Query: 473 MSAMP 487
+ P
Sbjct: 191 VPTPP 195
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/81 (30%), Positives = 38/81 (46%)
Frame = -2
Query: 561 SQAEGWQWMCLSGGWSNTLRAQKSGGMADIFMDTKYSSAN*NIVSGVKPCFAIS*ETSSK 382
SQ +G Q + LS +N L Q ++++ M Y + + N SG P F + S+
Sbjct: 587 SQLKGLQILDLS---NNNLSGQIPTFLSNLTM-LSYLNLSFNDFSGEVPTFGVFSNPSAI 642
Query: 381 FFPG*GRVKGTIPDQLCPHMS 319
G G++ G IPD P S
Sbjct: 643 SIHGNGKLCGGIPDLHLPRCS 663
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 390 SSKFFPG*GRVKGTIPDQLCPHMSPRMWAGNGADLE 283
SS+F PG G + D + WA N AD+E
Sbjct: 1113 SSEFIPGLGSINSFTHDPKRAELISNFWAENTADIE 1148
>09_06_0054 - 20542616-20542690,20543167-20543286
Length = 64
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 581 SRAYCKSPKQKAGSGCVCP 525
+R CKSP+Q GS C P
Sbjct: 39 ARYGCKSPEQSGGSACTAP 57
>05_05_0393 -
24632570-24632629,24633212-24633370,24633496-24633612,
24633697-24633831,24634140-24634337,24634449-24634529,
24634845-24635141,24635231-24636013,24636589-24636765
Length = 668
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/88 (27%), Positives = 35/88 (39%)
Frame = +2
Query: 164 ETSNMRQEVDDVWQQIKPLYDQLHAYVRRRLREAYGPERISRSAPLPAHILGDMWGQSWS 343
+ N R++ D + ++K L D R E Y ++ S PLP G
Sbjct: 361 QRENGRRD-DRRYSRMKYLIDNWGIEKFRAEVEKYYGKKFEDSRPLPEWQFNSYLGWQEQ 419
Query: 344 GIVPFTLPYPGKNLLDVSQEMAKQGFTP 427
F LPYP N + V+ + G TP
Sbjct: 420 VTAVFLLPYPRSNHV-VTGGLGNSGHTP 446
>02_01_0781 - 5824528-5824811,5824943-5825141
Length = 160
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 322 HVGTELVGYRAFYPSLPWEKLARCLSGNGEAG 417
H E+V AF SLP+ LA LSG G G
Sbjct: 17 HFLAEIVELMAFIFSLPFRLLAEILSGGGGDG 48
>02_01_0351 -
2535305-2535627,2535707-2535842,2535942-2535977,
2536057-2536173
Length = 203
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 242 VRRRLREAYGPERISRSAPLP 304
VRR +RE Y PER+S S P
Sbjct: 160 VRRSVRERYSPERLSLSGRRP 180
>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
Length = 487
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 161 YETSNMRQEVDDVWQQIKPLYDQLHAYVRRRLREAYGPERISRSA 295
Y S + ++D +W+ + LY + YV REA ER+ +A
Sbjct: 123 YLVSGSKGDLDRLWRTLHALYHPRNLYVVHLDREAAVSERLELAA 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,251
Number of Sequences: 37544
Number of extensions: 466698
Number of successful extensions: 1263
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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