Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte15e14
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    28   0.78 
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    27   2.4  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   4.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.2  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    25   5.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   5.5  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   7.3  
SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.6  

>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +1

Query: 337 NKDNRKDEVEVREGVKGRNGVNEVREGDFRGNNSNGVNEVREGEIGRKWRVSGVXEGDIR 516
           + ++R++EV+     +  N  +    GD    +S+G N+  E  + RK   SG   GD++
Sbjct: 2   SSESRENEVKAETKDEIANDGSPQLNGDNNIQSSDGHNDENEESLSRKRDSSGATVGDLK 61


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 329 YVTVLPS--ITSYLLSSSQVLQHFPCFLTGFILLNSLQIGCL*ILVWAHN 186
           Y+ ++P+  + S+++ S   L H P F    +L   L I  L ++VW+H+
Sbjct: 251 YILIMPAFGVVSHIIPS---LAHKPIFGKEGMLWAMLSIALLGLMVWSHH 297


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
 Frame = -2

Query: 342 FICYLCYCSPFHYLISLVFQPSFTTFSMFFNWFYFI-KF----VTNWLL 211
           F+C   Y   FHYL  +V+      F +   W Y + K     VT WLL
Sbjct: 519 FVCSSRYLLDFHYLTQVVY-GYMIGFGVGLFWVYLVGKLRSLGVTKWLL 566


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 337 NKDNRKDEVEVREGVKGRNGVNEVREGDFRGNNSNGVNEVRE 462
           NKDN ++ +   +  K    +NE+++    G   N +NEV+E
Sbjct: 828 NKDNFQNMINFDKRTKVTRILNEIKKFQSVGYMFNPINEVQE 869


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
          transcription Rct1|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 26 KTCNSFIKNIKIKLYN 73
          KTC +F+K  K+K YN
Sbjct: 23 KTCENFLKLCKLKYYN 38


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 258 FFNWFYFIKFVTNWLLI 208
           F+ WF  + F+T W+ I
Sbjct: 56  FYRWFNNLSFITRWITI 72


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/48 (16%), Positives = 23/48 (47%)
 Frame = -2

Query: 351 TIIFICYLCYCSPFHYLISLVFQPSFTTFSMFFNWFYFIKFVTNWLLI 208
           ++ F+C  C+    H  +  VF P     + + + ++  K + + +++
Sbjct: 708 SLTFLCISCFIMRHHLFVWSVFSPKLLYNASWASMYFLAKCLISTIMV 755


>SPCC584.12 |mug42||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 115

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 93  SFNTFTPLYNFIFIFFIKLLHVF 25
           +F T  P + F   FF+ LLH++
Sbjct: 72  NFITSLPNFQFPLFFFVSLLHLY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,812
Number of Sequences: 5004
Number of extensions: 34913
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)